add_genomic_data: Merge the metadata and genomic_data by the col_merge.

In maous1/Pandem2simulator: Data simulator for Pandem2

Merge the metadata and genomic_data by the col_merge.

Description

Merge the metadata and genomic_data by the col_merge. Metadata and genomic_data must have the same name of the column that will be used for merge.

Usage

add_genomic_data(
  metadata,
  genomic_data,
  var_names_merge,
  var_names_count,
  var_names_time
)

Arguments

metadata	the dataset metadata containing the column col_merge
genomic_data	The dataset containing the substitutions, deletions and missing data. The form of this dataset is based on the output of nextclade and differents mutation.
var_names_count	the name of the column used to desaggregate the metadata
var_names_time	the name of the column where the dates are found format = "%Y-%m-%d"
col_merge	The name of the column that will be used to merge the data
mutation

Value

The function adds according to col_merge the columns of mutations coming from genomic_data in metadata

maous1/Pandem2simulator documentation built on Feb. 11, 2023, 11:04 p.m.