plotFeature: Plot feature's gradients/classes across all samples (cells)...

In maplesword/RefSimSpec:

Description

This function plot the samples based on the given coordinates, coloring each dot based on the value of its corresponding feature value/class.

Usage

plotFeature(coord, values = NULL, emphasize = NULL, col = NULL,
  colorPal = NULL, edges = NULL, main = NA, xlab = "Dim-1",
  ylab = "Dim-2", cex.main = 1, cex.lab = 1, cex.axis = 1,
  lwd.edges = 0.2, col.edges = "#bdbdbd50", cex = 1, ...)

Arguments

coord	The plotting coordinates, expected to be of two columns. Each row represents one dot for one sample (cell).
emphasize	The Indices of samples (cells) to be emphasized. When it is set, the colors of all the other cells are set to be #bdbdbd30.
col	The customized colors of dots. Either col or value must be given.
...	Other arguments passing to the plot function.
value	The values to be shown, with each value representing one sample (cell) with the same order as coord.

maplesword/RefSimSpec documentation built on May 23, 2019, 1:47 p.m.