diffusionMat: Calculate the heat diffusion matrix when reaching equilibrium
In maplesword/TOMRwModule: TOMRwModule: Module identification in network by incorporating additional numeric attribute of vertices
Description
Usage
Arguments
Value
Description
This function calculate the equilibrium heat diffusion
matrix, using HotNet2 algorithm (Leiserson
MDM, et al. Nat Genet. 2015).
Usage
1
diffusionMat(links = interactions_brain, directed = FALSE, beta = 0.55)
Arguments
links
A two-column matrix or data frame, with each row representing one interaction
directed
Whether the interactions are directed
beta
Insulating parameter between 0 and 1
Value
The heat diffusion matrix
maplesword/TOMRwModule documentation built on May 31, 2019, 1:16 p.m.
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Description Usage Arguments Value
Description
This function calculate the equilibrium heat diffusion matrix, using HotNet2 algorithm (Leiserson MDM, et al. Nat Genet. 2015).
Usage
1 | diffusionMat(links = interactions_brain, directed = FALSE, beta = 0.55)
|
Arguments
links |
A two-column matrix or data frame, with each row representing one interaction |
directed |
Whether the interactions are directed |
beta |
Insulating parameter between 0 and 1 |
Value
The heat diffusion matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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