soilproperties: Calculate Zonal Soil Properties

In mapme-initiative/mapme.biodiversity: Efficient Monitoring of Global Biodiversity Portfolios

Calculate Zonal Soil Properties

Description

This indicator allows the extraction of zonal statistics for resource layers previously downloaded from SoilGrids, thus in total supporting the calculation of zonal statistics for 10 different soil properties at 6 different depths for a total of 4 different model outputs (stat). Zonal statistics will be calculated for all SoilGrid layers that have been previously made available vie get_resources().

Usage

calc_soilproperties(engine = "extract", stats = "mean")

Arguments

engine	The preferred processing functions from either one of "zonal", "extract" or "exactextract" as character.
stats	Function to be applied to compute statistics for polygons either single or multiple inputs as character. Supported statistics are: "mean", "median", "sd", "min", "max", "sum" "var".

Details

The required resource for this indicator is:

• soilgrids

Value

A function that returns an indicator tibble with soilgrid layers and statistics as variables and the corresponding statistics as value.

Examples

if (FALSE) {
  library(sf)
  library(mapme.biodiversity)

  mapme_options(
    outdir = NULL,
    verbose = FALSE
  )

  aoi <- system.file("extdata", "sierra_de_neiba_478140_2.gpkg",
    package = "mapme.biodiversity"
  ) %>%
    read_sf() %>%
    get_resources(
      get_soilgrids(
        layers = "clay",
        depths = "0-5cm",
        stats = "mean"
      )
    ) %>%
    calc_indicators(
      calc_soilproperties(engine = "extract", stats = c("mean", "median"))
    ) %>%
    portfolio_long()

  aoi
}

mapme-initiative/mapme.biodiversity documentation built on April 5, 2025, 12:47 p.m.