dropsim_parameters-class: An S4 class to hold simulation parameters.

In marchinilab/dropsim: dropsim: Single Cell RNAseq simulator for droplet technology

Description

An S4 class to hold simulation parameters.

Slots

n_genes

integer; number of genes to simulate

n_cells

integer; number of cells to simulate

gene_meanlog

numeric; meanlog of lognormal distribution to simulate means from, see ?rlnorm for more details

gene_sdlog

numeric; sdlog of lognormal distribution to simulate means from, see ?rlnorm for more details

library_meanlog

numeric; meanlog of lognormal distribution to simulate library sizes from, see ?rlnorm for more details

library_sdlog

numeric; sdlog of lognormal distribution to simulate library sizes from, see ?rlnorm for more details

groups

data.table with variables 'scale', 'cells' and 'names' scale is a numeric vector of the scale parameter for the logistic distribution to simulate the fold changes from cells is a list of integer vector giving the indexes of cells each differential expression should be applied to, cells can be a member of more than one group names is a character vector of cell group names

marchinilab/dropsim documentation built on May 17, 2019, 1:34 p.m.