intScores: A list of genomic scores integrated across distinct data sets...

In marchion/RTopper: This package is designed to perform Gene Set Analysis across multiple genomic platforms

A list of genomic scores integrated across distinct data sets to be used to run the examples in the RTopper package

Description

A list containing a named numeric vector corresponding to the genomic score resulting from the integration across distinct data set. These integrated gene-to-phenotype scores are computed by the computeDrStat function. Can be used as input to runBatchGSE.

Usage

 data(intScores) 

Format

This object is a list of length one:

"integrated": a numeric vector of length 500, corresponding to the integrated phenotype association scores computed for each of the 500 genes used in the examples;

Source

Computed using the computeDrStat function from the TCGA data contained in dat and pheno.

Examples

data(intScores)
class(intScores)
names(intScores)
str(intScores)

marchion/RTopper documentation built on Feb. 17, 2025, 7:42 a.m.