fmsy.FLIBM: Estimate maximum sustainable yeild (Fmsy) of an FLIBM object

In marchtaylor/FLIBM: Individual-based operating model for fisheries simulations

Estimate maximum sustainable yeild (Fmsy) of an FLIBM object

Description

bla

Usage

fmsy.FLIBM(
  obj = NULL,
  FMs = seq(0, 1, 0.1),
  years = dimnames(obj$stock.a)$year,
  yearsCompare = dimnames(obj$stock.a)$year,
  parallel = FALSE,
  no_cores = detectCores() - 1,
  clusterType = "PSOCK",
  outfile = "output.txt",
  seed = 1,
  resDir = tempdir(),
  cleanup = TRUE
)

Arguments

obj	bla
FMs	bla
years	bla
yearsCompare	bla
parallel	bla
no_cores	bla
clusterType	bla
outfile	bla
seed	bla
resDir	path to intermediate objects (default = tempdir()). Change directory if objects should be kept. Otherwise temporary directory is used, which is automatically deleted following the R session.
cleanup	logical. Default TRUE.

Value

data.frame

Examples

data(stkMed)
stkMed$rec$params$rmax <- 1e2
resdf <- fmsy.FLIBM(stkMed, years = ac(2000:2009),
  yearsCompare = ac(2005:2009), no_cores = 3,
  FMs = seq(0,1,length.out = 6),
  cleanup = TRUE,
  parallel = TRUE
)
calcRefpts(resdf, ypr = FALSE, spar=0.15)

marchtaylor/FLIBM documentation built on Jan. 19, 2025, 10:56 p.m.