Files in marcusrosenblatt/PEtab2dmod
Import Model and Data from PEtab Files

.Rbuildignore
.directory
.gitignore
Benchmark-Models-PEtab-master/.gitignore
Benchmark-Models-PEtab-master/.travis.yml
Benchmark-Models-PEtab-master/Benchmark-Models/Beer_MolBioSystems2014/Beer_MolBioSystems2014.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Beer_MolBioSystems2014/General_info.xlsx
Benchmark-Models-PEtab-master/Benchmark-Models/Beer_MolBioSystems2014/experimentalCondition_Beer_MolBioSystems2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Beer_MolBioSystems2014/measurementData_Beer_MolBioSystems2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Beer_MolBioSystems2014/model_Beer_MolBioSystems2014.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Beer_MolBioSystems2014/observables_Beer_MolBioSystems2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Beer_MolBioSystems2014/parameters_Beer_MolBioSystems2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Beer_MolBioSystems2014/simulatedData_Beer_MolBioSystems2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/Boehm_JProteomeRes2014.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/General_info.xlsx
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/experimentalCondition_Boehm_JProteomeRes2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/measurementData_Boehm_JProteomeRes2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/model_Boehm_JProteomeRes2014.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/observables_Boehm_JProteomeRes2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/parameters_Boehm_JProteomeRes2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/simulatedData_Boehm_JProteomeRes2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Boehm_JProteomeRes2014/visualizationSpecification_Boehm_JProteomeRes2014.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Borghans_BiophysChem1997/Borghans_BiophysChem1997.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Borghans_BiophysChem1997/General_info.xlsx
Benchmark-Models-PEtab-master/Benchmark-Models/Borghans_BiophysChem1997/experimentalCondition_Borghans_BiophysChem1997.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Borghans_BiophysChem1997/measurementData_Borghans_BiophysChem1997.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Borghans_BiophysChem1997/model_Borghans_BiophysChem1997.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Borghans_BiophysChem1997/observables_Borghans_BiophysChem1997.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Borghans_BiophysChem1997/parameters_Borghans_BiophysChem1997.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Borghans_BiophysChem1997/simulatedData_Borghans_BiophysChem1997.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Brannmark_JBC2010/Brannmark_JBC2010.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Brannmark_JBC2010/experimentalCondition_Brannmark_JBC2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Brannmark_JBC2010/measurementData_Brannmark_JBC2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Brannmark_JBC2010/model_Brannmark_JBC2010.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Brannmark_JBC2010/observables_Brannmark_JBC2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Brannmark_JBC2010/parameters_Brannmark_JBC2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Brannmark_JBC2010/simulatedData_Brannmark_JBC2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Bruno_JExpBio2016/Bruno_JExpBio2016.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Bruno_JExpBio2016/experimentalCondition_Bruno_JExpBio2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Bruno_JExpBio2016/measurementData_Bruno_JExpBio2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Bruno_JExpBio2016/model_Bruno_JExpBio2016.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Bruno_JExpBio2016/observables_Bruno_JExpBio2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Bruno_JExpBio2016/parameters_Bruno_JExpBio2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Bruno_JExpBio2016/simulatedData_Bruno_JExpBio2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Bruno_JExpBio2016/visualizationSpecification_Bruno_JExpBio2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Chen_MSB2009/Chen_MSB2009.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Chen_MSB2009/experimentalCondition_Chen_MSB2009.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Chen_MSB2009/measurementData_Chen_MSB2009.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Chen_MSB2009/model_Chen_MSB2009.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Chen_MSB2009/observables_Chen_MSB2009.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Chen_MSB2009/parameters_Chen_MSB2009.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Chen_MSB2009/simulatedData_Chen_MSB2009.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Chen_MSB2009/visualizationSpecification_Chen_MSB2009.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Crauste_CellSystems2017/Crauste_CellSystems2017.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Crauste_CellSystems2017/General_info.xlsx
Benchmark-Models-PEtab-master/Benchmark-Models/Crauste_CellSystems2017/experimentalCondition_Crauste_CellSystems2017.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Crauste_CellSystems2017/measurementData_Crauste_CellSystems2017.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Crauste_CellSystems2017/model_Crauste_CellSystems2017.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Crauste_CellSystems2017/observables_Crauste_CellSystems2017.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Crauste_CellSystems2017/parameters_Crauste_CellSystems2017.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Crauste_CellSystems2017/simulatedData_Crauste_CellSystems2017.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Elowitz_Nature2000/Elowitz_Nature2000.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Elowitz_Nature2000/General_info.xlsx
Benchmark-Models-PEtab-master/Benchmark-Models/Elowitz_Nature2000/experimentalCondition_Elowitz_Nature2000.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Elowitz_Nature2000/measurementData_Elowitz_Nature2000.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Elowitz_Nature2000/model_Elowitz_Nature2000.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Elowitz_Nature2000/observables_Elowitz_Nature2000.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Elowitz_Nature2000/parameters_Elowitz_Nature2000.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Elowitz_Nature2000/simulatedData_Elowitz_Nature2000.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fiedler_BMC2016/Fiedler_BMC2016.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Fiedler_BMC2016/experimentalCondition_Fiedler_BMC2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fiedler_BMC2016/measurementData_Fiedler_BMC2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fiedler_BMC2016/model_Fiedler_BMC2016.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Fiedler_BMC2016/observables_Fiedler_BMC2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fiedler_BMC2016/parameters_Fiedler_BMC2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fiedler_BMC2016/simulatedData_Fiedler_BMC2016.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fujita_SciSignal2010/Fujita_SciSignal2010.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Fujita_SciSignal2010/General_info.xlsx
Benchmark-Models-PEtab-master/Benchmark-Models/Fujita_SciSignal2010/experimentalCondition_Fujita_SciSignal2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fujita_SciSignal2010/measurementData_Fujita_SciSignal2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fujita_SciSignal2010/model_Fujita_SciSignal2010.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Fujita_SciSignal2010/observables_Fujita_SciSignal2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fujita_SciSignal2010/parameters_Fujita_SciSignal2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Fujita_SciSignal2010/simulatedData_Fujita_SciSignal2010.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Sneyd_PNAS2002/General_info.xlsx
Benchmark-Models-PEtab-master/Benchmark-Models/Sneyd_PNAS2002/Sneyd_PNAS2002.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Sneyd_PNAS2002/experimentalCondition_Sneyd_PNAS2002.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Sneyd_PNAS2002/measurementData_Sneyd_PNAS2002.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Sneyd_PNAS2002/model_Sneyd_PNAS2002.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Sneyd_PNAS2002/observables_Sneyd_PNAS2002.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Sneyd_PNAS2002/parameters_Sneyd_PNAS2002.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Sneyd_PNAS2002/simulatedData_Sneyd_PNAS2002.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Weber_BMC2015/Weber_BMC2015.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Weber_BMC2015/experimentalCondition_Weber_BMC2015.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Weber_BMC2015/measurementData_Weber_BMC2015.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Weber_BMC2015/model_Weber_BMC2015.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Weber_BMC2015/observables_Weber_BMC2015.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Weber_BMC2015/parameters_Weber_BMC2015.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Weber_BMC2015/simulatedData_Weber_BMC2015.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Zheng_PNAS2012/General_info.xlsx
Benchmark-Models-PEtab-master/Benchmark-Models/Zheng_PNAS2012/Zheng_PNAS2012.yaml
Benchmark-Models-PEtab-master/Benchmark-Models/Zheng_PNAS2012/experimentalCondition_Zheng_PNAS2012.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Zheng_PNAS2012/measurementData_Zheng_PNAS2012.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Zheng_PNAS2012/model_Zheng_PNAS2012.xml
Benchmark-Models-PEtab-master/Benchmark-Models/Zheng_PNAS2012/observables_Zheng_PNAS2012.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Zheng_PNAS2012/parameters_Zheng_PNAS2012.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/Zheng_PNAS2012/simulatedData_Zheng_PNAS2012.tsv
Benchmark-Models-PEtab-master/Benchmark-Models/checkBenchmarkModels.py
Benchmark-Models-PEtab-master/LICENSE
Benchmark-Models-PEtab-master/README.md
BenchmarkModels/.directory
BenchmarkModels/Bachmann_MSB2011/Bachmann_MSB2011.yaml
BenchmarkModels/Bachmann_MSB2011/General_info.xlsx
BenchmarkModels/Bachmann_MSB2011/experimentalCondition_Bachmann_MSB2011.tsv
BenchmarkModels/Bachmann_MSB2011/measurementData_Bachmann_MSB2011.tsv
BenchmarkModels/Bachmann_MSB2011/model_Bachmann_MSB2011.xml
BenchmarkModels/Bachmann_MSB2011/observables_Bachmann_MSB2011.tsv
BenchmarkModels/Bachmann_MSB2011/parameters_Bachmann_MSB2011.tsv
BenchmarkModels/Bachmann_MSB2011/simulatedData_Bachmann_MSB2011.tsv
BenchmarkModels/Becker_Science2010/Becker_Science2010.yaml
BenchmarkModels/Becker_Science2010/General_info.xlsx
BenchmarkModels/Becker_Science2010/experimentalCondition_Becker_Science2010__BaF3_Exp.tsv
BenchmarkModels/Becker_Science2010/experimentalCondition_Becker_Science2010__binding.tsv
BenchmarkModels/Becker_Science2010/measurementData_Becker_Science2010__BaF3_Exp.tsv
BenchmarkModels/Becker_Science2010/measurementData_Becker_Science2010__binding.tsv
BenchmarkModels/Becker_Science2010/model_Becker_Science2010__BaF3_Exp.xml
BenchmarkModels/Becker_Science2010/model_Becker_Science2010__binding.xml
BenchmarkModels/Becker_Science2010/parameters_Becker_Science2010.tsv
BenchmarkModels/Becker_Science2010/simulationData_Becker_Science2010__BaF3_Exp.tsv
BenchmarkModels/Becker_Science2010/simulationData_Becker_Science2010__binding.tsv
BenchmarkModels/Beer_MolBioSystems2014/Beer_MolBioSystems2014.yaml
BenchmarkModels/Beer_MolBioSystems2014/General_info.xlsx
BenchmarkModels/Beer_MolBioSystems2014/experimentalCondition_Beer_MolBioSystems2014.tsv
BenchmarkModels/Beer_MolBioSystems2014/measurementData_Beer_MolBioSystems2014.tsv
BenchmarkModels/Beer_MolBioSystems2014/model_Beer_MolBioSystems2014.xml
BenchmarkModels/Beer_MolBioSystems2014/observables_Beer_MolBioSystems2014.tsv
BenchmarkModels/Beer_MolBioSystems2014/parameters_Beer_MolBioSystems2014.tsv
BenchmarkModels/Beer_MolBioSystems2014/simulatedData_Beer_MolBioSystems2014.tsv
BenchmarkModels/Boehm_JProteomeRes2014/Boehm_JProteomeRes2014.yaml
BenchmarkModels/Boehm_JProteomeRes2014/General_info.xlsx
BenchmarkModels/Boehm_JProteomeRes2014/d2d_plots.png
BenchmarkModels/Boehm_JProteomeRes2014/experimentalCondition_Boehm_JProteomeRes2014.tsv
BenchmarkModels/Boehm_JProteomeRes2014/measurementData_Boehm_JProteomeRes2014.tsv
BenchmarkModels/Boehm_JProteomeRes2014/model_Boehm_JProteomeRes2014.xml
BenchmarkModels/Boehm_JProteomeRes2014/observables_Boehm_JProteomeRes2014.tsv
BenchmarkModels/Boehm_JProteomeRes2014/odemodel.c
BenchmarkModels/Boehm_JProteomeRes2014/odemodel.o
BenchmarkModels/Boehm_JProteomeRes2014/odemodel.so
BenchmarkModels/Boehm_JProteomeRes2014/odemodel_s.c
BenchmarkModels/Boehm_JProteomeRes2014/odemodel_s.o
BenchmarkModels/Boehm_JProteomeRes2014/odemodel_s.so
BenchmarkModels/Boehm_JProteomeRes2014/parameters_Boehm_JProteomeRes2014.tsv
BenchmarkModels/Boehm_JProteomeRes2014/simulatedData_Boehm_JProteomeRes2014.tsv
BenchmarkModels/Boehm_JProteomeRes2014/visualizationSpecification_Boehm_JProteomeRes2014.tsv
BenchmarkModels/Borghans_BiophysChem1997/Borghans_BiophysChem1997.yaml
BenchmarkModels/Borghans_BiophysChem1997/General_info.xlsx
BenchmarkModels/Borghans_BiophysChem1997/d2d_plots.png
BenchmarkModels/Borghans_BiophysChem1997/experimentalCondition_Borghans_BiophysChem1997.tsv
BenchmarkModels/Borghans_BiophysChem1997/measurementData_Borghans_BiophysChem1997.tsv
BenchmarkModels/Borghans_BiophysChem1997/model_Borghans_BiophysChem1997.xml
BenchmarkModels/Borghans_BiophysChem1997/observables_Borghans_BiophysChem1997.tsv
BenchmarkModels/Borghans_BiophysChem1997/parameters_Borghans_BiophysChem1997.tsv
BenchmarkModels/Borghans_BiophysChem1997/simulatedData_Borghans_BiophysChem1997.tsv
BenchmarkModels/Brannmark_JBC2010/Brannmark_JBC2010.yaml
BenchmarkModels/Brannmark_JBC2010/experimentalCondition_Brannmark_JBC2010.tsv
BenchmarkModels/Brannmark_JBC2010/measurementData_Brannmark_JBC2010.tsv
BenchmarkModels/Brannmark_JBC2010/model_Brannmark_JBC2010.xml
BenchmarkModels/Brannmark_JBC2010/observables_Brannmark_JBC2010.tsv
BenchmarkModels/Brannmark_JBC2010/parameters_Brannmark_JBC2010.tsv
BenchmarkModels/Brannmark_JBC2010/simulatedData_Brannmark_JBC2010.tsv
BenchmarkModels/Bruno_JExpBio2016/Bruno_JExpBio2016.yaml
BenchmarkModels/Bruno_JExpBio2016/experimentalCondition_Bruno_JExpBio2016.tsv
BenchmarkModels/Bruno_JExpBio2016/measurementData_Bruno_JExpBio2016.tsv
BenchmarkModels/Bruno_JExpBio2016/model_Bruno_JExpBio2016.xml
BenchmarkModels/Bruno_JExpBio2016/observables_Bruno_JExpBio2016.tsv
BenchmarkModels/Bruno_JExpBio2016/parameters_Bruno_JExpBio2016.tsv
BenchmarkModels/Bruno_JExpBio2016/simulatedData_Bruno_JExpBio2016.tsv
BenchmarkModels/Bruno_JExpBio2016/visualizationSpecification_Bruno_JExpBio2016.tsv
BenchmarkModels/Chen_MSB2009/Chen_MSB2009.yaml
BenchmarkModels/Chen_MSB2009/experimentalCondition_Chen_MSB2009.tsv
BenchmarkModels/Chen_MSB2009/measurementData_Chen_MSB2009.tsv
BenchmarkModels/Chen_MSB2009/model_Chen_MSB2009.xml
BenchmarkModels/Chen_MSB2009/observables_Chen_MSB2009.tsv
BenchmarkModels/Chen_MSB2009/parameters_Chen_MSB2009.tsv
BenchmarkModels/Chen_MSB2009/simulatedData_Chen_MSB2009.tsv
BenchmarkModels/Chen_MSB2009/visualizationSpecification_Chen_MSB2009.tsv
BenchmarkModels/Crauste_CellSystems2017/Crauste_CellSystems2017.yaml
BenchmarkModels/Crauste_CellSystems2017/General_info.xlsx
BenchmarkModels/Crauste_CellSystems2017/d2d_plots.png
BenchmarkModels/Crauste_CellSystems2017/experimentalCondition_Crauste_CellSystems2017.tsv
BenchmarkModels/Crauste_CellSystems2017/measurementData_Crauste_CellSystems2017.tsv
BenchmarkModels/Crauste_CellSystems2017/model_Crauste_CellSystems2017.xml
BenchmarkModels/Crauste_CellSystems2017/observables_Crauste_CellSystems2017.tsv
BenchmarkModels/Crauste_CellSystems2017/parameters_Crauste_CellSystems2017.tsv
BenchmarkModels/Crauste_CellSystems2017/simulatedData_Crauste_CellSystems2017.tsv
BenchmarkModels/Elowitz_Nature2000/Elowitz_Nature2000.yaml
BenchmarkModels/Elowitz_Nature2000/experimentalCondition_Elowitz_Nature2000.tsv
BenchmarkModels/Elowitz_Nature2000/measurementData_Elowitz_Nature2000.tsv
BenchmarkModels/Elowitz_Nature2000/model_Elowitz_Nature2000.xml
BenchmarkModels/Elowitz_Nature2000/observables_Elowitz_Nature2000.tsv
BenchmarkModels/Elowitz_Nature2000/parameters_Elowitz_Nature2000.tsv
BenchmarkModels/Elowitz_Nature2000/simulatedData_Elowitz_Nature2000.tsv
BenchmarkModels/Fiedler_BMC2016/Fiedler_BMC2016.yaml
BenchmarkModels/Fiedler_BMC2016/General_info.xlsx
BenchmarkModels/Fiedler_BMC2016/experimentalCondition_Fiedler_BMC2016.tsv
BenchmarkModels/Fiedler_BMC2016/measurementData_Fiedler_BMC2016.tsv
BenchmarkModels/Fiedler_BMC2016/model_Fiedler_BMC2016.xml
BenchmarkModels/Fiedler_BMC2016/observables_Fiedler_BMC2016.tsv
BenchmarkModels/Fiedler_BMC2016/parameters_Fiedler_BMC2016.tsv
BenchmarkModels/Fiedler_BMC2016/simulatedData_Fiedler_BMC2016.tsv
BenchmarkModels/Fujita_SciSignal2010/Fujita_SciSignal2010.yaml
BenchmarkModels/Fujita_SciSignal2010/General_info.xlsx
BenchmarkModels/Fujita_SciSignal2010/d2d_plots.png
BenchmarkModels/Fujita_SciSignal2010/experimentalCondition_Fujita_SciSignal2010.tsv
BenchmarkModels/Fujita_SciSignal2010/measurementData_Fujita_SciSignal2010.tsv
BenchmarkModels/Fujita_SciSignal2010/model_Fujita_SciSignal2010.xml
BenchmarkModels/Fujita_SciSignal2010/observables_Fujita_SciSignal2010.tsv
BenchmarkModels/Fujita_SciSignal2010/parameters_Fujita_SciSignal2010.tsv
BenchmarkModels/Fujita_SciSignal2010/simulatedData_Fujita_SciSignal2010.tsv
BenchmarkModels/Fujita_SciSignal2010/visualizationSpecification_Fujita_SciSignal2010.tsv
BenchmarkModels/Lucarelli_CellSystems2018/General_info.xlsx
BenchmarkModels/Lucarelli_CellSystems2018/Lucarelli_CellSystems2018.yaml
BenchmarkModels/Lucarelli_CellSystems2018/experimentalCondition_Lucarelli_CellSystems2018.tsv
BenchmarkModels/Lucarelli_CellSystems2018/measurementData_Lucarelli_CellSystems2018.tsv
BenchmarkModels/Lucarelli_CellSystems2018/model_Lucarelli_CellSystems2018.xml
BenchmarkModels/Lucarelli_CellSystems2018/observables_Lucarelli_CellSystems2018.tsv
BenchmarkModels/Lucarelli_CellSystems2018/parameters_Lucarelli_CellSystems2018.tsv
BenchmarkModels/Lucarelli_CellSystems2018/simulatedData_Lucarelli_CellSystems2018.tsv
BenchmarkModels/Raia_CancerResearch2011/.~lock.observables_Raia_CancerResearch2011.tsv#
BenchmarkModels/Raia_CancerResearch2011/General_info.xlsx
BenchmarkModels/Raia_CancerResearch2011/Raia_CancerResearch2011.yaml
BenchmarkModels/Raia_CancerResearch2011/experimentalCondition_Raia_CancerResearch2011.tsv
BenchmarkModels/Raia_CancerResearch2011/measurementData_Raia_CancerResearch2011.tsv
BenchmarkModels/Raia_CancerResearch2011/model_Raia_CancerResearch2011.xml
BenchmarkModels/Raia_CancerResearch2011/observables_Raia_CancerResearch2011.tsv
BenchmarkModels/Raia_CancerResearch2011/parameters_Raia_CancerResearch2011.tsv
BenchmarkModels/Raia_CancerResearch2011/simulatedData_Raia_CancerResearch2011.tsv
BenchmarkModels/Raia_CancerResearch2011/visualizationSpecification_Raia_CancerResearch2011.tsv
BenchmarkModels/Schwen_PONE2014/.nfs00000000093508c500000017
BenchmarkModels/Schwen_PONE2014/.nfs00000000093508c700000018
BenchmarkModels/Schwen_PONE2014/.~lock.observables_Schwen_PONE2014.tsv#
BenchmarkModels/Schwen_PONE2014/General_info.xlsx
BenchmarkModels/Schwen_PONE2014/Schwen_PONE2014.yaml
BenchmarkModels/Schwen_PONE2014/experimentalCondition_Schwen_PONE2014.tsv
BenchmarkModels/Schwen_PONE2014/measurementData_Schwen_PONE2014.tsv
BenchmarkModels/Schwen_PONE2014/model_Schwen_PONE2014.xml
BenchmarkModels/Schwen_PONE2014/observables_Schwen_PONE2014.tsv
BenchmarkModels/Schwen_PONE2014/parameters_Schwen_PONE2014.tsv
BenchmarkModels/Schwen_PONE2014/simulatedData_Schwen_PONE2014.tsv
BenchmarkModels/Sneyd_PNAS2002/General_info.xlsx
BenchmarkModels/Sneyd_PNAS2002/Sneyd_PNAS2002.yaml
BenchmarkModels/Sneyd_PNAS2002/experimentalCondition_Sneyd_PNAS2002.tsv
BenchmarkModels/Sneyd_PNAS2002/measurementData_Sneyd_PNAS2002.tsv
BenchmarkModels/Sneyd_PNAS2002/model_Sneyd_PNAS2002.xml
BenchmarkModels/Sneyd_PNAS2002/observables_Sneyd_PNAS2002.tsv
BenchmarkModels/Sneyd_PNAS2002/parameters_Sneyd_PNAS2002.tsv
BenchmarkModels/Sneyd_PNAS2002/simulatedData_Sneyd_PNAS2002.tsv
BenchmarkModels/Swameye_PNAS2003/General_info.xlsx
BenchmarkModels/Swameye_PNAS2003/Swameye_PNAS2003.yaml
BenchmarkModels/Swameye_PNAS2003/experimentalCondition_Swameye_PNAS2003.tsv
BenchmarkModels/Swameye_PNAS2003/measurementData_Swameye_PNAS2003.tsv
BenchmarkModels/Swameye_PNAS2003/model_Swameye_PNAS2003.xml
BenchmarkModels/Swameye_PNAS2003/observables_Swameye_PNAS2003.tsv
BenchmarkModels/Swameye_PNAS2003/parameters_Swameye_PNAS2003.tsv
BenchmarkModels/Swameye_PNAS2003/simulatedData_Swameye_PNAS2003.tsv
BenchmarkModels/Swameye_PNAS2003/visualizationSpecification_Swameye_PNAS2003.tsv
BenchmarkModels/Weber_BMC2015/Weber_BMC2015.yaml
BenchmarkModels/Weber_BMC2015/experimentalCondition_Weber_BMC2015.tsv
BenchmarkModels/Weber_BMC2015/measurementData_Weber_BMC2015.tsv
BenchmarkModels/Weber_BMC2015/model_Weber_BMC2015.xml
BenchmarkModels/Weber_BMC2015/observables_Weber_BMC2015.tsv
BenchmarkModels/Weber_BMC2015/parameters_Weber_BMC2015.tsv
BenchmarkModels/Weber_BMC2015/simulatedData_Weber_BMC2015.tsv
BenchmarkModels/Zheng_PNAS2012/General_info.xlsx
BenchmarkModels/Zheng_PNAS2012/Zheng_PNAS2012.yaml
BenchmarkModels/Zheng_PNAS2012/experimentalCondition_Zheng_PNAS2012.tsv
BenchmarkModels/Zheng_PNAS2012/measurementData_Zheng_PNAS2012.tsv
BenchmarkModels/Zheng_PNAS2012/model_Zheng_PNAS2012.xml
BenchmarkModels/Zheng_PNAS2012/model_Zheng_PNAS2012_old.xml
BenchmarkModels/Zheng_PNAS2012/observables_Zheng_PNAS2012.tsv
BenchmarkModels/Zheng_PNAS2012/parameters_Zheng_PNAS2012.tsv
BenchmarkModels/Zheng_PNAS2012/simulatedData_Zheng_PNAS2012.tsv
DESCRIPTION
Links
NAMESPACE
PEtab2dmod.Rproj
PEtabTests/0001/0001.md
PEtabTests/0001/0001.py
PEtabTests/0001/_0001.yaml
PEtabTests/0001/_0001_solution.yaml
PEtabTests/0001/_conditions.tsv
PEtabTests/0001/_measurements.tsv
PEtabTests/0001/_model.xml
PEtabTests/0001/_observables.tsv
PEtabTests/0001/_parameters.tsv
PEtabTests/0001/_simulations.tsv
PEtabTests/0002/0002.md
PEtabTests/0002/0002.py
PEtabTests/0002/_0002.yaml
PEtabTests/0002/_0002_solution.yaml
PEtabTests/0002/_conditions.tsv
PEtabTests/0002/_measurements.tsv
PEtabTests/0002/_model.xml
PEtabTests/0002/_observables.tsv
PEtabTests/0002/_parameters.tsv
PEtabTests/0002/_simulations.tsv
PEtabTests/0003/0003.md
PEtabTests/0003/0003.py
PEtabTests/0003/_0003.yaml
PEtabTests/0003/_0003_solution.yaml
PEtabTests/0003/_conditions.tsv
PEtabTests/0003/_measurements.tsv
PEtabTests/0003/_model.xml
PEtabTests/0003/_observables.tsv
PEtabTests/0003/_parameters.tsv
PEtabTests/0003/_simulations.tsv
PEtabTests/0004/0004.md
PEtabTests/0004/0004.py
PEtabTests/0004/_0004.yaml
PEtabTests/0004/_0004_solution.yaml
PEtabTests/0004/_conditions.tsv
PEtabTests/0004/_measurements.tsv
PEtabTests/0004/_model.xml
PEtabTests/0004/_observables.tsv
PEtabTests/0004/_parameters.tsv
PEtabTests/0004/_simulations.tsv
PEtabTests/0005/0005.md
PEtabTests/0005/0005.py
PEtabTests/0005/_0005.yaml
PEtabTests/0005/_0005_solution.yaml
PEtabTests/0005/_conditions.tsv
PEtabTests/0005/_measurements.tsv
PEtabTests/0005/_model.xml
PEtabTests/0005/_observables.tsv
PEtabTests/0005/_parameters.tsv
PEtabTests/0005/_simulations.tsv
PEtabTests/0005/conversion_modified.xml
PEtabTests/0006/0006.md
PEtabTests/0006/0006.py
PEtabTests/0006/_0006.yaml
PEtabTests/0006/_0006_solution.yaml
PEtabTests/0006/_conditions.tsv
PEtabTests/0006/_measurements.tsv
PEtabTests/0006/_model.xml
PEtabTests/0006/_observables.tsv
PEtabTests/0006/_parameters.tsv
PEtabTests/0006/_simulations.tsv
PEtabTests/0007/0007.md
PEtabTests/0007/0007.py
PEtabTests/0007/_0007.yaml
PEtabTests/0007/_0007_solution.yaml
PEtabTests/0007/_conditions.tsv
PEtabTests/0007/_measurements.tsv
PEtabTests/0007/_model.xml
PEtabTests/0007/_observables.tsv
PEtabTests/0007/_parameters.tsv
PEtabTests/0007/_simulations.tsv
PEtabTests/0008/0008.md
PEtabTests/0008/0008.py
PEtabTests/0008/_0008.yaml
PEtabTests/0008/_0008_solution.yaml
PEtabTests/0008/_conditions.tsv
PEtabTests/0008/_measurements.tsv
PEtabTests/0008/_model.xml
PEtabTests/0008/_observables.tsv
PEtabTests/0008/_parameters.tsv
PEtabTests/0008/_simulations.tsv
PEtabTests/0009/0009.md
PEtabTests/0009/0009.py
PEtabTests/0009/_0009.yaml
PEtabTests/0009/_0009_solution.yaml
PEtabTests/0009/_conditions.tsv
PEtabTests/0009/_measurements.tsv
PEtabTests/0009/_model.xml
PEtabTests/0009/_observables.tsv
PEtabTests/0009/_parameters.tsv
PEtabTests/0009/_simulations.tsv
PEtabTests/0010/0010.md
PEtabTests/0010/0010.py
PEtabTests/0010/_0010.yaml
PEtabTests/0010/_0010_solution.yaml
PEtabTests/0010/_conditions.tsv
PEtabTests/0010/_measurements.tsv
PEtabTests/0010/_model.xml
PEtabTests/0010/_observables.tsv
PEtabTests/0010/_parameters.tsv
PEtabTests/0010/_simulations.tsv
PEtabTests/0010/conversion_modified.xml
PEtabTests/0011/0011.md
PEtabTests/0011/0011.py
PEtabTests/0011/_0011.yaml
PEtabTests/0011/_0011_solution.yaml
PEtabTests/0011/_conditions.tsv
PEtabTests/0011/_measurements.tsv
PEtabTests/0011/_model.xml
PEtabTests/0011/_observables.tsv
PEtabTests/0011/_parameters.tsv
PEtabTests/0011/_simulations.tsv
PEtabTests/0011/conversion_modified.xml
PEtabTests/0012/0012.md
PEtabTests/0012/0012.py
PEtabTests/0012/_0012.yaml
PEtabTests/0012/_0012_solution.yaml
PEtabTests/0012/_conditions.tsv
PEtabTests/0012/_measurements.tsv
PEtabTests/0012/_model.xml
PEtabTests/0012/_observables.tsv
PEtabTests/0012/_parameters.tsv
PEtabTests/0012/_simulations.tsv
PEtabTests/0013/0013.md
PEtabTests/0013/0013.py
PEtabTests/0013/_0013.yaml
PEtabTests/0013/_0013_solution.yaml
PEtabTests/0013/_conditions.tsv
PEtabTests/0013/_measurements.tsv
PEtabTests/0013/_model.xml
PEtabTests/0013/_observables.tsv
PEtabTests/0013/_parameters.tsv
PEtabTests/0013/_simulations.tsv
PEtabTests/0013/conversion_modified.xml
PEtabTests/0014/0014.md
PEtabTests/0014/0014.py
PEtabTests/0014/_0014.yaml
PEtabTests/0014/_0014_solution.yaml
PEtabTests/0014/_conditions.tsv
PEtabTests/0014/_measurements.tsv
PEtabTests/0014/_model.xml
PEtabTests/0014/_observables.tsv
PEtabTests/0014/_parameters.tsv
PEtabTests/0014/_simulations.tsv
PEtabTests/0015/0015.md
PEtabTests/0015/0015.py
PEtabTests/0015/_0015.yaml
PEtabTests/0015/_0015_solution.yaml
PEtabTests/0015/_conditions.tsv
PEtabTests/0015/_measurements.tsv
PEtabTests/0015/_model.xml
PEtabTests/0015/_observables.tsv
PEtabTests/0015/_parameters.tsv
PEtabTests/0015/_simulations.tsv
PEtabTests/0016/0016.md
PEtabTests/0016/0016.py
PEtabTests/0016/_0016.yaml
PEtabTests/0016/_0016_solution.yaml
PEtabTests/0016/_conditions.tsv
PEtabTests/0016/_measurements.tsv
PEtabTests/0016/_model.xml
PEtabTests/0016/_observables.tsv
PEtabTests/0016/_parameters.tsv
PEtabTests/0016/_simulations.tsv
R/PEtab2dMod.R R/fitModelPEtabSBML.R R/getConditionsSBML.R R/getDataPEtabSBML.R R/getInitialsSBML.R R/getObservablesSBML.R R/getParametersSBML.R R/getReactionsSBML.R R/importPEtabSBML.R R/mynormL2.R R/plotPEtabSBML.R R/testPEtabSBML.R
SBMLextern/CoRC installation
SBMLextern/CoRC.R SBMLextern/SBMLinterface.R SBMLextern/model_example.R
SBMLextern/sbmlAmiciDmod.py
Setup_PEtabSBML.R exportPEtab.R man/fitModelPEtabSBML.Rd man/getConditionsSBML.Rd man/getDataPEtabSBML.Rd man/getInitialsSBML.Rd man/getObservablesSBML.Rd man/getParametersSBML.Rd man/getReactionsSBML.Rd man/importPEtabSBML.Rd man/mynormL2.Rd man/plotPEtabSBML.Rd man/testPEtabSBML.Rd testPEtabSBML.R vignettes/PEtab2dmod_example.Rmd vignettes/PEtab2dmod_example.md
vignettes/observables.png
vignettes/test.Rmd
marcusrosenblatt/PEtab2dmod documentation built on March 20, 2020, 8:48 p.m.