fitModelPEtabSBML: Fit a model imported via importPEtabSBML

In marcusrosenblatt/PEtab2dmod: Import Model and Data from PEtab Files

Description

A wrapper function to use mstrust with imported PEtabSBML models. Some reasonable standard arguments for mstrust are used. Results of mstrust are written to Results folder.

A wrapper function to use mstrust with imported PEtabSBML models. Some reasonable standard arguments for mstrust are used. Results of mstrust are written to Results folder.

Usage

fitModelPEtabSBML(objfun = obj, nrfits = 4, nrcores = 4, useBounds = TRUE)

fitModelPEtabSBML(objfun = obj, nrfits = 4, nrcores = 4, useBounds = TRUE)

Arguments

objfun	Objective function to be minimized as created by importPEtabSBML.
nrfits	numeric, Number of fits to be performed
nrcores	numeric, Number of cores to be used
useBounds	boolean, if TRUE, parameter bounds are taken as provided in PEtab format, if FALSE no parameter bounds are applied

Value

parframe with the parameter estimated of the multi-start optimization

parframe with the parameter estimated of the multi-start optimization

Author(s)

Marcus Rosenblatt and Svenja Kemmer

Marcus Rosenblatt and Svenja Kemmer

marcusrosenblatt/PEtab2dmod documentation built on March 20, 2020, 8:48 p.m.