Description Usage Arguments Value Examples
View source: R/facet-heatmap.R
Creates a heatmap of copy number profiles from segment files.
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seg |
a segmentation file containing the segmentation information of multiple patients |
filenames |
the names of the segment files to be loaded and processed (Note must end in ".Rdata"). |
path |
the relative path to the files folder from your current directory |
patients |
the names of the patients of the respective filenames. Default simply 1 to number of files. |
min.purity |
the minimum purity of the sample required to be kept in the final dataset. Default is 0.3. |
epsilon |
level of unions when aggregating segments between |
ordered |
order in which patients should be printed. Default NUll leads to hierarchical clustering. |
outcome |
for seg file only, if outcome associated with study it will be printed along the x axis for each patient |
p a heatmap corresponding to the segnment files inputted
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