amanida_read | R Documentation |
amanida_read
imports the data and formats for compute_amanida
or amanida_vote
functions
amanida_read(file, mode, coln, separator = NULL)
file |
path to file |
mode |
indicate if data will be quantitative or qualitative. Options are:
|
coln |
columns names to use. It has to be in order identification, p-values, fold-changes, sample size and reference. |
separator |
the separator used on file |
Note that amanida_read
skips rows with missing values or NA. Negatives values for fold-change are transformed to positive (1/value).
Formats compatible are csv, xlsx, xls or txt.
tibble table with data imported
coln <- c("Compound Name", "P-value", "Fold-change", "N total", "References")
input_file <- getsampleDB()
datafile <- amanida_read(input_file, mode = "quan", coln, separator=";")
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