A list with elements
trna, a vector of length 64 of tRNA gene copy numbers
in the Escherichia coli K-12 genome,
w, a data frame with some codon bias
statistics for 49 E. coli K-12 coding genes, and
m, a 49 by 61 matrix of
codon frequencies for the 49 genes in question.
An object of class
list of length 3.
Mario dos Reis
1 2 3 4 5 6 7 8 9 10 11
# 87 tRNA genes in the E. coli K-12 genome: sum(ecolik12$trna) # Two copies are isoacceptors for Phe, with anticodon GAA (codon TTC) ecolik12$trna # ecolik12$w, a data frame with codon bias statistics names(ecolik12$w) # Effective number of codons vs. gene length (in codons) plot(ecolik12$w$Nc, ecolik12$w$L_aa, xlab="Nc", ylab="Gene length")
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.