Man pages for marionlouveaux/mamut2r
Import of MaMuT xml files into R
| add_mic_loc | Calculating coordinates in pixels |
| add_px_loc | Calculating coordinates in pixels |
| checkTrack | Check order of Track_df Function checks if spots source and... |
| countSpot | Counting spots per timepoints |
| getFluo | Extracting fluorescence values Extracting fluorescence values... |
| get_registration | Get information relative to registration in ViewTransform... |
| heatmap2int | Conversion of continuous variable to discrete integers for... |
| hex2int | Converting HEX colors to MaMut integer color scale |
| int2hours | Convert an integer to hour minutes in digital format Assumes... |
| makeSpotNode | Create a spot node To modify the mamut.xml file. |
| mmFluo | Calculate a mean and median fluorescent value for each... |
| mmFluo_all | Calculate mean and median fluorescent values for individual... |
| mmFluo_perT | Calculate a mean and median fluorescent value for all spots... |
| mmFluo_wholeMovie | Calculate a mean and median fluorescent value for the whole... |
| modifyXML | Modify MaMuT .xml file Update values of existing parameters... |
| pipe | Pipe operator |
| posLoc2posWorld | Calculating the coordinates N.B.: pos_world = (3D-HASHING) x... |
| prod_affine_registration | Product of affine transformations |
| read_ViewRegistration | Get information relative to registration in .xml Big Data... |
| spots.and.tracks | Combining spots and tracks dataframes |
| Spots.as.dataframe | Convert MaMuT xml Spots tags to a dataframe |
| track2plot | Plotting tracks Plotting MaMuT tracks with custom color code |
| Tracks.as.dataframe | Convert MaMuT xml Tracks tags to a dataframe |
| vect2mat | Takes a 12 coordinates vector and returns a 4x4 matrix |
