getFluo: Extracting fluorescence values Extracting fluorescence values...
In marionlouveaux/mamut2r: Import of MaMuT xml files into R

Extracting fluorescence values Extracting fluorescence values in an .h5 file in the BigDataViewer format around given coordinates

1 2	getFluo(H5_path, Spots_df, x_px = x_px, y_px = y_px, z_px = z_px, timepoint = FRAME, cubeSize = 5)

`H5_path`	path to the H5 file used to create the mamut.xml file
`Spots_df`	dataframe containing on each rows spots locations at which to retrieve fluorescent values
`x_px`	name of the column with x coordinates in pixels in Spots_df
`y_px`	name of the column with y coordinates in pixels in Spots_df
`z_px`	name of the column with z coordinates in pixels in Spots_df
`timepoint`	name of the column where the timepoints or frames are stored
`cubeSize`	half the length of the cube side length. By default the cube is 10x10x10 pixels.