| BASH |
Man page
|
| BASHCompact |
Man page
|
| BASHDiffuse |
Man page
|
| BASHExtended |
Man page
|
| BeadLevelList |
Man page
|
| BeadLevelList-class |
Man page
|
| Detection |
Man page
|
| Detection,ExpressionSetIllumina-method |
Man page
|
| Detection<- |
Man page
|
| Detection<-,ExpressionSetIllumina,matrix-method |
Man page
|
| ExpressionSetIllumina-class |
Man page
|
| HULK |
Man page
|
| [,ExpressionSetIllumina-method |
Man page
|
| [[,beadLevelData,ANY,missing-method |
Man page
|
| addFeatureData |
Man page
|
| annotation,ExpressionSetIllumina-method |
Man page
|
| annotation,beadLevelData-method |
Man page
|
| annotation<-,ExpressionSetIllumina,character-method |
Man page
|
| annotation<-,beadLevelData,character-method |
Man page
|
| arrayNames |
Man page
|
| arrayNames,BeadLevelList-method |
Man page
|
| backgroundCorrectSingleSection |
Man page
|
| beadLevelData-class |
Man page
|
| beadRegistrationData-class |
Man page
|
| beadStatusVector |
Man page
|
| beadarray-package |
Man page
|
| beadarrayUsersGuide |
Man page
|
| boxplot,ExpressionSetIllumina-method |
Man page
|
| boxplot,beadLevelData-method |
Man page
|
| boxplot,beadRegistrationData-method |
Man page
|
| calculateDetection |
Man page
|
| calculateOutlierStats |
Man page
|
| checkPlatform |
Man page
|
| checkRegistration |
Man page
|
| combine,ExpressionSetIllumina,ExpressionSetIllumina-method |
Man page
Man page
|
| combine,beadLevelData,beadLevelData-method |
Man page
|
| combinedControlPlot |
Man page
|
| controlProbeDetection |
Man page
|
| convertBeadLevelList |
Man page
|
| createBeadSummaryData |
Man page
|
| createTargetsFile |
Man page
|
| dim,ExpressionSetIllumina-method |
Man page
|
| dim,beadLevelData-method |
Man page
|
| expressionQCPipeline |
Man page
|
| exprs,ExpressionSetIllumina-method |
Man page
|
| exprs<-,ExpressionSetIllumina,matrix-method |
Man page
|
| generateNeighbours |
Man page
|
| genericBeadIntensityPlot |
Man page
|
| getAnnotation |
Man page
|
| getArrayData |
Man page
|
| getArrayData,BeadLevelList-method |
Man page
|
| getBeadData |
Man page
|
| getControlProfile |
Man page
|
| greenChannel |
Man page
|
| greenChannelTransform |
Man page
|
| identifyControlBeads |
Man page
|
| illuminaBackground |
Man page
|
| illuminaChannel-class |
Man page
|
| illuminaForeground |
Man page
|
| illuminaOutlierMethod |
Man page
|
| illuminaSharpen |
Man page
|
| imageplot |
Man page
|
| insertBeadData |
Man page
|
| insertSectionData |
Man page
|
| logGreenChannelTransform |
Man page
|
| logRatioTransform |
Man page
|
| logRedChannelTransform |
Man page
|
| makeControlProfile |
Man page
|
| makeQCTable |
Man page
|
| medianBackground |
Man page
|
| medianNormalise |
Man page
|
| metrics |
Man page
|
| metrics,beadLevelData-method |
Man page
|
| nObservations |
Man page
|
| nObservations,ExpressionSetIllumina-method |
Man page
|
| nObservations<- |
Man page
|
| nObservations<-,ExpressionSetIllumina,matrix-method |
Man page
|
| noOutlierMethod |
Man page
|
| normaliseIllumina |
Man page
|
| numBeads |
Man page
|
| numBeads,beadLevelData-method |
Man page
|
| outlierplot |
Man page
|
| p95 |
Man page
|
| p95,beadLevelData,character-method |
Man page
|
| platformSigs |
Man page
|
| plotBeadIntensities |
Man page
|
| plotBeadLocations |
Man page
|
| plotChipLayout |
Man page
|
| plotMA |
Man page
|
| plotMAXY |
Man page
|
| plotTIFF |
Man page
|
| plotXY |
Man page
|
| poscontPlot |
Man page
|
| processSwathData |
Man page
|
| qcData |
Man page
|
| qcData,ExpressionSetIllumina-method |
Man page
|
| quickSummary |
Man page
|
| readBeadSummaryData |
Man page
|
| readIllumina |
Man page
|
| readLocsFile |
Man page
|
| readSampleSheet |
Man page
|
| readTIFF |
Man page
|
| redChannelTransform |
Man page
|
| removeBeadData |
Man page
|
| sampleSheet |
Man page
|
| sampleSheet,ExpressionSetIllumina-method |
Man page
|
| sampleSheet,beadLevelData-method |
Man page
|
| sampleSheet<- |
Man page
|
| sampleSheet<-,ExpressionSetIllumina,data.frame-method |
Man page
|
| sampleSheet<-,beadLevelData,data.frame-method |
Man page
|
| se.exprs,ExpressionSetIllumina-method |
Man page
|
| se.exprs<-,ExpressionSetIllumina,matrix-method |
Man page
|
| sectionNames |
Man page
|
| sectionNames,beadLevelData-method |
Man page
|
| setAnnotation |
Man page
|
| setWeights |
Man page
|
| show,ExpressionSetIllumina-method |
Man page
|
| show,beadLevelData-method |
Man page
|
| show,beadRegistrationData-method |
Man page
|
| showArrayMask |
Man page
|
| snr |
Man page
|
| snr,beadLevelData,character-method |
Man page
|
| squeezedVarOutlierMethod |
Man page
|
| suggestAnnotation |
Man page
|
| summarize |
Man page
|
| weightsOutlierMethod |
Man page
|
