makeControlProfile: Retrieve control beads
In markdunning/beadarray-devel: Quality assessment and low-level analysis for Illumina BeadArray data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Function to retrieve the bead IDs for a particular annotation platform
Usage
1
makeControlProfile(annoName, excludeERCC = TRUE)
Arguments
annoName
An abberviated name for the annotation packaget. e.g. Humanv3, MouseV2
excludeERCC
Ignore any controls with REPORTERGROUPNAME beginning with ERCC. These are a large collection of spike controls on the Humanv4 chip and can make some control tables too big if they are included.
Details
The function will use the relevant annotation package (if it is installed) and return all IDs that are present in the REPORTERGROUPNAME mapping. Note that this mapping is only available in versions 1.12.0 and greater.
Value
A matrix with one row per control bead-type giving the bead-level ID (ArrayAddressID) and control type.
Author(s)
Mark Dunning
Examples
1
makeControlProfile("Humanv3")
markdunning/beadarray-devel documentation built on May 21, 2019, noon
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Description Usage Arguments Details Value Author(s) Examples
Description
Function to retrieve the bead IDs for a particular annotation platform
Usage
1 | makeControlProfile(annoName, excludeERCC = TRUE)
|
Arguments
annoName |
An abberviated name for the annotation packaget. e.g. Humanv3, MouseV2 |
excludeERCC |
Ignore any controls with REPORTERGROUPNAME beginning with ERCC. These are a large collection of spike controls on the Humanv4 chip and can make some control tables too big if they are included. |
Details
The function will use the relevant annotation package (if it is installed) and return all IDs that are present in the REPORTERGROUPNAME mapping. Note that this mapping is only available in versions 1.12.0 and greater.
Value
A matrix with one row per control bead-type giving the bead-level ID (ArrayAddressID) and control type.
Author(s)
Mark Dunning
Examples
1 | makeControlProfile("Humanv3")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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