quickSummary: Create summary values for specified IDs

In markdunning/beadarray: Quality assessment and low-level analysis for Illumina BeadArray data

Description

A utility function for quickly creating summary values for particular IDs (e.g. control IDs) on a given section.

Usage

quickSummary(BLData, array = 1, transFun = logGreenChannelTransform, reporterIDs = NULL, reporterTags = NULL, reporterFun = function(x) mean(x, na.rm = TRUE))

Arguments

BLData	a beadLevelData object
array	Which section to summarize
transFun	a transformation to be applied prior to summarization
reporterIDs	vector specifying the set of IDs to be summarized
reporterTags	a vector that divides the supplied IDs into categories
reporterFun	a function used to summarize each category

Details

The function can be used to calculate summarized values for particular control types on a section. The IDs for all controls are supplied in the reporterIDs argument along with which control type they belong to in the reporterTags argument. A summarized value for each control type is then calculated with the specified function (default is mean).

Author(s)

Mark Dunning

Examples

if(require(beadarrayExampleData)){

data(exampleBLData)

quickSummary(exampleBLData, array=1)
quickSummary(exampleBLData, array=2)

}

markdunning/beadarray documentation built on May 9, 2019, 8:35 a.m.