xreactive_probes: Cross-reactive probes/loci

In markgene/maxprobes: Methylation Array Cross-Reactive Probes

Description

Get cross-reactive probe/locus IDs from internal data

Usage

xreactive_probes(array_type = "EPIC")

Arguments

array_type

A character scalar. One of "EPIC", "450K". Defaults to "EPIC".

Details

The cross-reactive probes/loci of EPIC/850K are from papers:

1. Pidsley et al., Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling. Genome Biology (2016)

2. McCartney et al., Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip. Genomics Data (2016)

The cross-reactive probes/loci of 450K are from papers:

1. Chen et al., Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray. Epigenetics (2013)

2. Benton et al., An analysis of DNA methylation in human adipose tissue reveals differential modification of obesity genes before and after gastric bypass and weight loss. Genome Biology (2015)

Value

A character vector of probe IDs

Examples

xloci <- xreactive_probes()

markgene/maxprobes documentation built on May 17, 2019, 8:17 p.m.