README.md

GeuvadisTranscriptExpr package - example data for sQTL analysis

GeuvadisTranscriptExpr is a data package with transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project (Lappalainen T et al. Transcriptome and genome sequencing uncovers functional variation in humans. Nature. 2013)

Installation

To install the latest development version, use the devtool package (available here)

devtools::install_github("markrobinsonuzh/GeuvadisTranscriptExpr")

Vignette

The vignette contains all the preprocessing steps of the GEUVADIS data. It can be found in the "vignettes/GeuvadisTranscriptExpr.pdf" file. After installation, the vignette can be accessed from the R console by typing

browseVignettes("GeuvadisTranscriptExpr")


markrobinsonuzh/GeuvadisTranscriptExpr documentation built on May 21, 2019, 12:23 p.m.