syntenyPlotteR-package: syntenyPlotteR: Genome Synteny Visualization
In marta-fb/syntenyPlotteR: Genome Synteny Visualization
syntenyPlotteR-package R Documentation
syntenyPlotteR: Genome Synteny Visualization
Description
Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.
Author(s)
Maintainer: Marta Farre m.farre-belmonte@kent.ac.uk [copyright holder]
Authors:
Sarah Quigley slq4@kent.ac.uk
Joana Damas joanadamas@gmail.com
Denis Larkin dlarkin@rvc.ac.uk
See Also
Useful links:
Report bugs at https://github.com/Farre-lab/syntenyPlotteR/issues
marta-fb/syntenyPlotteR documentation built on Jan. 25, 2024, 3:34 p.m.
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| syntenyPlotteR-package | R Documentation |
syntenyPlotteR: Genome Synteny Visualization
Description
Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.
Author(s)
Maintainer: Marta Farre m.farre-belmonte@kent.ac.uk [copyright holder]
Authors:
Sarah Quigley slq4@kent.ac.uk
Joana Damas joanadamas@gmail.com
Denis Larkin dlarkin@rvc.ac.uk
See Also
Useful links:
Report bugs at https://github.com/Farre-lab/syntenyPlotteR/issues
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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