validation_info: Getting validation info

In martalovino/MoPc: What the Package Does (One Line, Title Case)

Getting validation info

Description

Function to know if a gene-mirna couple is validated in mirDB, TargetScan, mirtarBase

Usage

validation_info(mat, condv, genes_proteins, ncores, from_cor_mat = TRUE)

Arguments

mat	the correlation matrix (eventually with NAs). Genes on rows - mirnas on columns. Also, it can be a list of significant genes-mirnas with pvalue (to_validate dataframe).
condv	all mirnas in correlation matrix
genes_proteins	all genes/proteins in correlation matrix
ncores	max number of cores to prallelize the process
from_cor_mat	default to TRUE, set FALSE if you input the to_validate dataframe

Value

A list with four fields: list(a=to_validate, b=universe, c =mirDB, d=ts, e=tarbase)

martalovino/MoPc documentation built on May 30, 2022, 4:11 p.m.