comb_coils: Combine coil data based on the first data point of a...

In martin3141/spant: MR Spectroscopy Analysis Tools

Combine coil data based on the first data point of a reference signal.

Description

By default, elements are phased and scaled prior to summation. Where a reference signal is not given, the mean dynamic signal will be used instead.

Usage

comb_coils(
  metab,
  ref = NULL,
  noise = NULL,
  scale = TRUE,
  scale_method = "sig_noise_sq",
  sum_coils = TRUE,
  noise_region = c(-0.5, -2.5),
  average_ref_dyns = TRUE,
  ref_pt_index = 1,
  ret_metab_only = FALSE
)

Arguments

metab	MRS data containing metabolite data.
ref	MRS data containing reference data (optional).
noise	MRS data from a noise scan (optional).
scale	option to rescale coil elements based on the first data point (logical).
scale_method	one of "sig_noise_sq", "sig_noise" or "sig".
sum_coils	sum the coil elements as a final step (logical).
noise_region	the spectral region (in ppm) to estimate the noise.
average_ref_dyns	take the mean of the reference scans in the dynamic dimension before use.
ref_pt_index	time-domain point to use for estimating phase and scaling values.
ret_metab_only	return the metabolite data only, even if reference data has been specified.

Value

MRS data.

martin3141/spant documentation built on April 14, 2024, 4:15 a.m.