CHANGELOG.md
In martingerdin/bengaltiger: bengaltiger
Changelog
v1.1.5 (25/02/2020)
Bug Fixes:
- #183 Replace rowr dependency
v1.1.4 (05/12/2019)
Bug Fixes:
- #179 Make sure event proportion is maintained when splitting dataset using events
- #178 Prevent SplitDataset from changing column types when splitting using events
- #156 CreateFlowchart fails
v1.1.3 (28/11/2019)
Bug Fixes:
- #175 Implement sample.names in SplitDataset
v1.1.2 (28/11/2019)
Bug Fixes:
- #174 Fix events argument checking in SplitDataset
v1.1.1 (28/11/2019)
Enhancements:
- #170 Add only.codebook.variables to CreateSampleCharacteristicsTable
Bug Fixes:
- #171 Fix how variables missing from the codebook are assigned labels
- #169 Remove object column from split dataset
- #168 Abbreviations and explanations are not exported to file from CreateSampleCharacteristicsTable
v1.1.0 (25/11/2019)
New Functions
- #167 SplitDataset
v1.0.3 (25/11/2019)
Enhancements:
- #166 Recommend use of version lables until milestones can be created with ghi
- #165 Update complete workflow to include merge of master into develop after releasing a new version
v1.0.2 (21/11/2019)
Enhancements:
v1.0.1 (21/11/2019)
Enhancements:
- #161 Modify README
- #160 Change from - to : as recommended pratice in commit messages
- #159 Add use of --no-ff back into CONTRIBUTING
- #158 Simplify workflow in CONTRIBUTING
- #157 Split README into README and CONTRIBUTING
- #149 Replace read.csv with fread in ImportStudyData
- #148 Add argument to return labels rather than values from GetRevisedTraumaScoreComponents
- #142 Add argument to allow users to return sample characteristics table as data.frame
- #140 Add missing data count in each variable to last exclusion node if complete.cases in CreateFlowchart
- #139 Return abbreviations with table from CreateSampleCharacteristicsTable
- #131 Add argument to return incomplete data from CreateStudySample
- #129 Use codebook to make sample characteristics tables pretty
- #116 Change exclusion text in flowchart
- #115 Add option to change font in CreateFlowchart
Bug Fixes:
- #155 Fix undefined columns selected error caused by OnlyHemothoraxPatients
- #154 Correct comments in OnlyBluntTraumaPatients
- #150 Fix error in CreateSampleCharacteristicsTable when calculating % of total sample when data is multiple imputed
- #146 Fix error handling of flowchart.elements in CreateFlowchart
- #137 Add missing to OnlyTransferredPatients text
- #135 Throw warning if a variable is not in the codebook when creating sample characteristics table
- #130 Fix error when producing the manual caused by ≥
New Functions
- #153 OnlyHemothoraxPatients
- #134 OnlyTransferredPatients
- #133 OnlyPatientsPresentingAfter
- #132 OnlyPatientsPresentingBefore
- #126 OnlyAdults
- #70 CreateFlowchart
v1.0.0 (21/11/2019)
Enhancements:
- #141 Add argument to allow user to choose to return raw or pretty table
- #136 Add argument to change name of missingness and exclusions result in CreateStudySample
- #121 Add strata argument to CreateBootstrapSamples
- #120 Add names to bootstrap samples generated by CreateBootstrapSamples
- #119 Rewrite CreateBootstrapSamples to conform to project style
- #117 Add option to return bootstrap samples instead of saving to disk
- #111 Add cross-validation to CreateFlowchart
- #58 Add package documentation
Bug Fixes:
- #138 Fix strange argument is of length zero error when using codebook argument in CreateSampleCharacteristicsTable
New Functions
v0.0.30.9000 (29/03/2019)
Bug Fixes:
- #110 Characteristic column comes out formatted weird with lots of ...
New Functions
- #108 AddSpecificInjuryVariable
v0.0.29.9000 (12/03/2019)
Bug Fixes:
- #106 Fix error in CreateSampleCharacteristicsTable, replace raw.table.data with table.data
- #103 Fix author names in description
v0.0.28.9000 (12/03/2019)
Enhancements:
- #102 Have CreateSampleCharacteristicsTable use table.name to name file when saved to disk
v0.0.27.9000 (10/03/2019)
No changelog for this release.
v.0.0.26.9000 (08/03/2019)
Enhancements:
- #98 Place (median [IQR]) in column header if only quantitative variables are reported by CreateSampleCharacteristicsTable
- #97 Place n in column header if only overall table is created by CreateSampleCharacteristicsTable
- #96 Indicate in sample characteristics table caption that data is multiple imputed
- #95 Remove levels column in sample characteristics table if only quantitative data is reported
- #93 Add message to CreateSampleCharacteristicsTable if data detected as multiple imputed
Bug Fixes:
- #100 .complete is not added to variables in CreateSampleCharacteristicsTable
- #94 Remove original data from study.sample when producing sample characteristics table of multiple imputed data
v.0.0.25.9000 (07/03/2019)
Enhancements:
- #92 Make CreateSampleCharacteristicsTable handle multiple imputed data
- #91 Update LogisticRegression
- #87 Update CreateLogisticRegressionTable to report both unadjusted and adjusted estimates
v0.0.24 (02/03/2019)
Enhancements:
- #77 Add argument to allow custom sample characteristics table name
- #74 Add script to update documentation
- #73 Create PDF manual
- #71 Modify how inclusions and exclusions are saved to results
- #54 Save results to .results
Bug Fixes:
- #79 CreateSampleCharacteristicsTable do not report all numeric variables as non-normal
- #76 SourceAdditionalFiles function.files.paths is a vector but should be a list
- #69 Add digits to table.options in LogisticRegression
New Functions
- #90 ICDVariables
- #88 EstimateInHospitalMortality
- #86 CreateLogisticRegressionSubTable
- #85 CreateBootstrapSamples
- #84 AddTriageRevisedTraumaScore
- #83 AddTimeToFirstVitals
- #82 AddTimeBetweenInjuryAndArrival
- #81 Add24HoursInHospitalMortality
- #80 AISVariables
- #75 OnlyAdolescentsAndYoungAdults
- #72 CompileResults
- #68 Add SaveToResults
- #67 Add CreateLogisticRegressionTable
- #66 Add LogisticRegression
- #60 SourceAdditionalFunctions
v0.0.23.9000 (02/11/2018)
Enhancements:
- #65 Add label so that gren ignores certain issues when creating release notes
Bug Fixes:
- #63 knitr and tableone are not loaded
v0.0.22.9000 (02/11/2018)
Bug Fixes:
- #62 Fix error in CreateSampleCharacteristicsTable error handling
v0.0.21.9000 (10/10/2018)
Bug Fixes:
- #57 Update function documentation
- #56 Fix syntax errors in AddTraumaticBrainInjury and OnlyPediatricPatients
New Functions
- #53 OnlyIsolatedTraumaticBrainInjuryPatients
- #51 EstimateTraumaticBrainInjuryProportion
- #46 AddTraumaticBrainInjury
v0.0.20.9000 (09/10/2018)
Enhancements:
- #48 Add ISS to default variables to include in study sample
- #43 Update README to include R package version update
- #37 Switch to ghi for command line issue management
- #25 Add function to import NTDB study data from mysql database
New Functions
- #49 MergeRoadTrafficInjuryCategories
- #47 CreateSampleCharacteristicsTable
- #44 Add30DayInHospitalMortality
v0.0.19.9000 (30/08/2018)
Enhancements:
- #41 Add steps and remaining observations to exclusions document
- #39 Add save missing report functionality to CreateStudySample
- #35 Add keep complete cases functionality to CreateStudySample
- #31 Change default data path in ImportStudyData
- #23 ImportTitcoMySQL
Bug Fixes:
- #38 CreateStudySample replaces exclusions file with each iteration
- #33 Replace \n with \n\n in OnlyPediatricPatients and OnlyPolytraumaPatients
New Functions
v0.0.18.9000 (28/08/2018)
Enhancements:
- #18 Add RMySQL to imports
New Functions
- #12 Init
v0.0.17.9000 (23/08/2018)
Bug Fixes:
- #17 Remove RunStudy.R from repository
v0.0.16.9000 (22/08/2018)
Enhancements:
- #16 Relax R version dependence to 3.3
v0.0.15.9000 (22/08/2018)
Enhancements:
- #15 Modify git workflow in README
v0.0.14.9000 (22/08/2018)
Bug Fixes:
New Functions
0.0.0.9000 (22/08/2018)
No changelog for this release.
v0.0.1.9000 (22/08/2018)
No changelog for this release.
v0.0.2.9000 (22/08/2018)
Bug Fixes:
- #1 Fix formatting of branch name headings and links in README
martingerdin/bengaltiger documentation built on Feb. 29, 2020, 4:46 p.m.
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Changelog
v1.1.5 (25/02/2020)
Bug Fixes:
- #183 Replace rowr dependency
v1.1.4 (05/12/2019)
Bug Fixes:
- #179 Make sure event proportion is maintained when splitting dataset using events
- #178 Prevent SplitDataset from changing column types when splitting using events
- #156 CreateFlowchart fails
v1.1.3 (28/11/2019)
Bug Fixes:
- #175 Implement sample.names in SplitDataset
v1.1.2 (28/11/2019)
Bug Fixes:
- #174 Fix events argument checking in SplitDataset
v1.1.1 (28/11/2019)
Enhancements:
- #170 Add only.codebook.variables to CreateSampleCharacteristicsTable
Bug Fixes:
- #171 Fix how variables missing from the codebook are assigned labels
- #169 Remove object column from split dataset
- #168 Abbreviations and explanations are not exported to file from CreateSampleCharacteristicsTable
v1.1.0 (25/11/2019)
New Functions
- #167 SplitDataset
v1.0.3 (25/11/2019)
Enhancements:
- #166 Recommend use of version lables until milestones can be created with ghi
- #165 Update complete workflow to include merge of master into develop after releasing a new version
v1.0.2 (21/11/2019)
Enhancements:
v1.0.1 (21/11/2019)
Enhancements:
- #161 Modify README
- #160 Change from - to : as recommended pratice in commit messages
- #159 Add use of --no-ff back into CONTRIBUTING
- #158 Simplify workflow in CONTRIBUTING
- #157 Split README into README and CONTRIBUTING
- #149 Replace read.csv with fread in ImportStudyData
- #148 Add argument to return labels rather than values from GetRevisedTraumaScoreComponents
- #142 Add argument to allow users to return sample characteristics table as data.frame
- #140 Add missing data count in each variable to last exclusion node if complete.cases in CreateFlowchart
- #139 Return abbreviations with table from CreateSampleCharacteristicsTable
- #131 Add argument to return incomplete data from CreateStudySample
- #129 Use codebook to make sample characteristics tables pretty
- #116 Change exclusion text in flowchart
- #115 Add option to change font in CreateFlowchart
Bug Fixes:
- #155 Fix undefined columns selected error caused by OnlyHemothoraxPatients
- #154 Correct comments in OnlyBluntTraumaPatients
- #150 Fix error in CreateSampleCharacteristicsTable when calculating % of total sample when data is multiple imputed
- #146 Fix error handling of flowchart.elements in CreateFlowchart
- #137 Add missing to OnlyTransferredPatients text
- #135 Throw warning if a variable is not in the codebook when creating sample characteristics table
- #130 Fix error when producing the manual caused by ≥
New Functions
- #153 OnlyHemothoraxPatients
- #134 OnlyTransferredPatients
- #133 OnlyPatientsPresentingAfter
- #132 OnlyPatientsPresentingBefore
- #126 OnlyAdults
- #70 CreateFlowchart
v1.0.0 (21/11/2019)
Enhancements:
- #141 Add argument to allow user to choose to return raw or pretty table
- #136 Add argument to change name of missingness and exclusions result in CreateStudySample
- #121 Add strata argument to CreateBootstrapSamples
- #120 Add names to bootstrap samples generated by CreateBootstrapSamples
- #119 Rewrite CreateBootstrapSamples to conform to project style
- #117 Add option to return bootstrap samples instead of saving to disk
- #111 Add cross-validation to CreateFlowchart
- #58 Add package documentation
Bug Fixes:
- #138 Fix strange argument is of length zero error when using codebook argument in CreateSampleCharacteristicsTable
New Functions
v0.0.30.9000 (29/03/2019)
Bug Fixes:
- #110 Characteristic column comes out formatted weird with lots of ...
New Functions
- #108 AddSpecificInjuryVariable
v0.0.29.9000 (12/03/2019)
Bug Fixes:
- #106 Fix error in CreateSampleCharacteristicsTable, replace raw.table.data with table.data
- #103 Fix author names in description
v0.0.28.9000 (12/03/2019)
Enhancements:
- #102 Have CreateSampleCharacteristicsTable use table.name to name file when saved to disk
v0.0.27.9000 (10/03/2019)
No changelog for this release.
v.0.0.26.9000 (08/03/2019)
Enhancements:
- #98 Place (median [IQR]) in column header if only quantitative variables are reported by CreateSampleCharacteristicsTable
- #97 Place n in column header if only overall table is created by CreateSampleCharacteristicsTable
- #96 Indicate in sample characteristics table caption that data is multiple imputed
- #95 Remove levels column in sample characteristics table if only quantitative data is reported
- #93 Add message to CreateSampleCharacteristicsTable if data detected as multiple imputed
Bug Fixes:
- #100 .complete is not added to variables in CreateSampleCharacteristicsTable
- #94 Remove original data from study.sample when producing sample characteristics table of multiple imputed data
v.0.0.25.9000 (07/03/2019)
Enhancements:
- #92 Make CreateSampleCharacteristicsTable handle multiple imputed data
- #91 Update LogisticRegression
- #87 Update CreateLogisticRegressionTable to report both unadjusted and adjusted estimates
v0.0.24 (02/03/2019)
Enhancements:
- #77 Add argument to allow custom sample characteristics table name
- #74 Add script to update documentation
- #73 Create PDF manual
- #71 Modify how inclusions and exclusions are saved to results
- #54 Save results to .results
Bug Fixes:
- #79 CreateSampleCharacteristicsTable do not report all numeric variables as non-normal
- #76 SourceAdditionalFiles function.files.paths is a vector but should be a list
- #69 Add digits to table.options in LogisticRegression
New Functions
- #90 ICDVariables
- #88 EstimateInHospitalMortality
- #86 CreateLogisticRegressionSubTable
- #85 CreateBootstrapSamples
- #84 AddTriageRevisedTraumaScore
- #83 AddTimeToFirstVitals
- #82 AddTimeBetweenInjuryAndArrival
- #81 Add24HoursInHospitalMortality
- #80 AISVariables
- #75 OnlyAdolescentsAndYoungAdults
- #72 CompileResults
- #68 Add SaveToResults
- #67 Add CreateLogisticRegressionTable
- #66 Add LogisticRegression
- #60 SourceAdditionalFunctions
v0.0.23.9000 (02/11/2018)
Enhancements:
- #65 Add label so that gren ignores certain issues when creating release notes
Bug Fixes:
- #63 knitr and tableone are not loaded
v0.0.22.9000 (02/11/2018)
Bug Fixes:
- #62 Fix error in CreateSampleCharacteristicsTable error handling
v0.0.21.9000 (10/10/2018)
Bug Fixes:
- #57 Update function documentation
- #56 Fix syntax errors in AddTraumaticBrainInjury and OnlyPediatricPatients
New Functions
- #53 OnlyIsolatedTraumaticBrainInjuryPatients
- #51 EstimateTraumaticBrainInjuryProportion
- #46 AddTraumaticBrainInjury
v0.0.20.9000 (09/10/2018)
Enhancements:
- #48 Add ISS to default variables to include in study sample
- #43 Update README to include R package version update
- #37 Switch to ghi for command line issue management
- #25 Add function to import NTDB study data from mysql database
New Functions
- #49 MergeRoadTrafficInjuryCategories
- #47 CreateSampleCharacteristicsTable
- #44 Add30DayInHospitalMortality
v0.0.19.9000 (30/08/2018)
Enhancements:
- #41 Add steps and remaining observations to exclusions document
- #39 Add save missing report functionality to CreateStudySample
- #35 Add keep complete cases functionality to CreateStudySample
- #31 Change default data path in ImportStudyData
- #23 ImportTitcoMySQL
Bug Fixes:
- #38 CreateStudySample replaces exclusions file with each iteration
- #33 Replace \n with \n\n in OnlyPediatricPatients and OnlyPolytraumaPatients
New Functions
v0.0.18.9000 (28/08/2018)
Enhancements:
- #18 Add RMySQL to imports
New Functions
- #12 Init
v0.0.17.9000 (23/08/2018)
Bug Fixes:
- #17 Remove RunStudy.R from repository
v0.0.16.9000 (22/08/2018)
Enhancements:
- #16 Relax R version dependence to 3.3
v0.0.15.9000 (22/08/2018)
Enhancements:
- #15 Modify git workflow in README
v0.0.14.9000 (22/08/2018)
Bug Fixes:
New Functions
0.0.0.9000 (22/08/2018)
No changelog for this release.
v0.0.1.9000 (22/08/2018)
No changelog for this release.
v0.0.2.9000 (22/08/2018)
Bug Fixes:
- #1 Fix formatting of branch name headings and links in README
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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