R/data.R

In martinjhnhadley/gene.alignment.tables: Interactive Gene Alignment Visualisations for Shiny Apps

#' hbv_pol_sequence sequence data
#'
#' A fake genome sequence for example purposes.
#'
#' @format A data frame with 843 rows and 4 variables:
#' \describe{
#'   \item{position}{Gene position}
#'   \item{reference}{Column to display}
#'   \item{genome.a}{Alternative lettering}
#'   \item{colour}{Colour to display this position as in the sequence viz}
#' }
#' @source \url{http://philippa-matthews.com}
"hbv_pol_sequence"


#' hbv_long_s_sequence sequence data
#'
#' A fake genome sequence for example purposes.
#'
#' @format A data frame with 300 rows and 4 variables:
#' \describe{
#'   \item{position}{Gene position}
#'   \item{reference}{Column to display}
#'   \item{genome.a}{Alternative lettering}
#'   \item{colour}{Colour to display this position as in the sequence viz}
#' }
#' @source \url{http://philippa-matthews.com}
"hbv_long_s_sequence"

#' coding_region_colours
#'
#' Example colour codings for different coding regions found in both example datasets, \code{hbv_long_s_sequence} and \code{hbv_pol_sequence}.
#'
#' @format A data frame with 6 rows and 2 variables:
#' \describe{
#'   \item{label}{Coding region name}
#'   \item{colour}{Hex colour to use for the specified coding region}
#' }
#' @source \url{http://philippa-matthews.com}
"coding_region_colours"