In marziasettino/MMRFBiolinks: R package for integrative analysis of MMRF-CoMMpass data

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MMRFBiolinks

An R package that extends TCGABiolink package for integrative analysis with MMRF-COMMPASS data

MMRFBiolinks extends TCGABiolink package for searching, downloading and analyzing MMRF-COMMPASS data available at the NCI’s Genomic Data Commons (GDC) Data Portal.

Installation

Once R (version “4.0”) has been started, you can install the released version of MMRFBiolinks from GitHub with:

devtools::install_github("marziasettino/MMRFBiolinks", build_vignettes = TRUE)
library(MMRFBiolinks)

Required libraries

library(TCGAbiolinks)
library(SummarizedExperiment)
library(dplyr)
library(DT)
library(ggplot2)

Vignettes

A list of all currently integrated vignettes can be obtained through:

vignette(package="MMRFBiolinks")

The best way to view vignettes is in your web browser:

devtools::load_all(".")
browseVignettes("MMRFBiolinks")

Get the list of the example data sets

data(package = "MMRFBiolinks")

marziasettino/MMRFBiolinks documentation built on Jan. 24, 2023, 4:49 a.m.