MethPed_sample: Sample dataset to MethPed package.
In mashranga/MethPed: A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes
Description
Usage
Format
Value
References
See Also
Examples
Description
Methylation beta-values generated with the Infinium HumanMethylation450 BeadChips (Illumina).
Usage
1
Format
A data frame with 468821 probes and 2 tumor samples
Value
DNA Methylation beta-values
References
[1] Anna Danielsson, Szilárd Nemes, Magnus Tisell, Birgitta Lannering, Claes Nordborg, Magnus Sabel, and Helena Carén. "MethPed: A DNA Methylation Classifier Tool for the Identification of Pediatric Brain Tumor Subtypes". Clinical Epigenetics 2015, 7:62, 2015
See Also
See http://www.clinicalepigeneticsjournal.com/content/7/1/62 for more details.
Examples
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#################### Loading and view sample data
data(MethPed_sample)
head(MethPed_sample)
#################### Check dimention of sample data
dim(MethPed_sample) # Check number of probes and samples in data
#################### Checking missing value in the data
missingIndex <- checkNA(MethPed_sample)
mashranga/MethPed documentation built on May 29, 2019, 4:40 a.m.
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Description Usage Format Value References See Also Examples
Description
Methylation beta-values generated with the Infinium HumanMethylation450 BeadChips (Illumina).
Usage
1 |
Format
A data frame with 468821 probes and 2 tumor samples
Value
DNA Methylation beta-values
References
[1] Anna Danielsson, Szilárd Nemes, Magnus Tisell, Birgitta Lannering, Claes Nordborg, Magnus Sabel, and Helena Carén. "MethPed: A DNA Methylation Classifier Tool for the Identification of Pediatric Brain Tumor Subtypes". Clinical Epigenetics 2015, 7:62, 2015
See Also
See http://www.clinicalepigeneticsjournal.com/content/7/1/62 for more details.
Examples
1 2 3 4 5 6 7 8 9 | #################### Loading and view sample data
data(MethPed_sample)
head(MethPed_sample)
#################### Check dimention of sample data
dim(MethPed_sample) # Check number of probes and samples in data
#################### Checking missing value in the data
missingIndex <- checkNA(MethPed_sample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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