plot_tailor_fluorescence: plot_tailor_fluorescence

In matei-ionita/Tailor: Gaussian mixture modeling for heavy-tailed distributions in Flow Cytometry data

Description

Plot a t-SNE reduction to 2d of the cluster centroids, color-coded by mean fluorescence intensity for each parameter.

Usage

plot_tailor_fluorescence(tailor_obj, midpoint = 1.5)

Arguments

tailor_obj	A tailor object, as obtained from tailor.learn.
midpoint	Numeric, to be used as the middle of the scale for intensity plots.

Value

A grid of 2d reduced plots of cluster centroids, one for each parameter.

Examples

fileName <- system.file("extdata", "sampled_flowset_old.rda",
                       package = "Tailor")
load(fileName)
tailor_params <- flowCore::colnames(fs_old)[c(7:9, 11:22)]
tailor_obj <- tailor_learn(data = fs_old,
                          params = tailor_params,
                          mixture_components = 50)

plot_tailor_fluorescence(tailor_obj)

matei-ionita/Tailor documentation built on Jan. 4, 2021, 11:47 a.m.