ecat2nii: Ecat7 to NIfTI Converter

In mathesong/kipettools: R Tools For KI PET Group Files

Ecat7 to NIfTI Converter

Description

Wrapper for the Turku PET Centre ecat2nii function

Usage

ecat2nii(
  v_filename,
  inpath = getwd(),
  out_filename = NULL,
  outpath = getwd(),
  checkLines = F,
  compressFile = T,
  bids_sidecar = T
)

Arguments

v_filename	Filename of the input .v file. Preferably without file extension. Should only be the filename. Path goes into inpath.
inpath	Path to the input file. Defaults to working directory.
out_filename	Filename of the output file. Preferably without file extension. Defaults to same as the input filename. Should only be the filename. Path goes into outpath.
outpath	Path where the output file should be placed. Defaults to the working directory.
checkLines	Should the system commands be checked (and not run)? Default FALSE.
compressFile	Should the output be compressed as a .nii.gz file? Default TRUE.
bids_sidecar	Should a BIDS sidecar file also be produced? Default T.

Value

If checkLines is TRUE, the commands will be returned. If checkLines is FALSE, the binary success of each command will be returned.

Examples

ecat2nii('r_abcd_1', out_filename = 'abcd_1', checkLines = F, compressFile = T)

mathesong/kipettools documentation built on Feb. 5, 2024, 10:10 p.m.