Man pages for mathosi/jj
Just Joise
| bin_vector | bin a numeric vector and return a factor of bins |
| feature_heatmap | feature heatmap |
| from_to | remap values |
| get_mode | get the mode |
| j | print small subset of R object as overview |
| jj_arrange_ggplots | arrange ggplots in a grid |
| jj_association_heatmap | find associations of embedding scores with meta data |
| jj_bind_features_with_dr_df | bind features together with meta.data |
| jj_cap_vals | Cap values at the top/bottom of a vector by a threshold |
| jj_cluster_correlation_heatmap | encirle fraction of points that contain x percent of the... |
| jj_compare_vectors | quantify number of common elements between two or more... |
| jj_describe_df | describe all the columns in a data.frame |
| jj_filter_values_by_abundance | fitler a list of vectors for those values having min/max... |
| jj_get_colours | get colours as named vector from file |
| jj_get_contour_lines | encirle fraction of points that contain x percent of the... |
| jj_get_feature_mat | extract expression values for features of interest from... |
| jj_get_jj_colours | get a set of predefined colours for a vector |
| jj_get_pval_df | get p values for group comparisons with wilcox test |
| jj_get_reduction_coords | get cell embeddings together with meta data |
| jj_gg_heatmap | feature heatmap based on ggplot |
| jj_initialize_df | create data.frame of defined size with initial value in each... |
| jj_list_to_df | Convert list to data.frame in long/wide format |
| jj_match_matrices | match two matrices/data.frames by their row names/column... |
| jj_plot_blended_feature | Plot scatterplot of two features as combined colorscale |
| jj_plot_confusion_matrix | confusion_matrix |
| jj_plot_fc_fc | show results from differential expression analysis |
| jj_plot_features | plot features |
| jj_plot_stacked_barplot | encirle fraction of points that contain x percent of the... |
| jj_plot_volcano | show results from differential expression analysis |
| jj_prime_factorization | Prime factorization |
| jj_save_bed | write Granges or region string vector to bed file |
| jj_summarize_nearest_neighbour_data | smooth values using nearest neighbours |
| load_save_excel | Load/save excel workbooks using openxlsx library |
| matrix_to_vector | convert a matrix to a 1d vector |
| min_max_normalize | min-max normalize |
| mixsort_factor | alphanumerically sort levels of a factor |
| plot_feature_by_group | violin plot of feature by group |
| plot_hist | plot histogram of data |
| replace_if | replace values that meet a condition |
| summarise_vals | summarise values as mean, mode, or sum by a group vector |
| zip_lists | zip together two lists into one |
| zip_vectors | zip vectors into one |
