jj_get_reduction_coords: get cell embeddings together with meta data

In mathosi/jj: Just Joise

get cell embeddings together with meta data

Description

Extract cell embeddings together with meta data from a Seurat, cisTopic or ArchR-object

Usage

jj_get_reduction_coords(obj, redname = NULL, exact_match = TRUE)

Arguments

obj	Seurat, cisTopic or ArchR object
redname	name of the reduction, for which cell embeddings should be obtained
exact_match	if TRUE, redname must exactly match the name of the reduction in the object

Examples

head(jj_get_reduction_coords(pbmc_small, 'tsne'))

mathosi/jj documentation built on Feb. 25, 2024, 2:29 p.m.