API for matsengrp/sumrep
Summary statistics for B cell receptor (BCR) repertoires
| Global functions | |
|---|---|
| FactorTransform | Source code |
| FactorTransform.default | Source code |
| FactorTransform.vector | Source code |
| Loadings.variation | Source code |
| appendQuerySequencesToPartisAnnotationsFile | Source code |
| binContinuousListsAsDiscrete | Source code |
| bootstrapFasta | Source code |
| callPartis | Source code |
| checkColumn | Source code |
| convertFastaToTxt | Source code |
| convertNucleobasesToAminoAcids | Source code |
| convertNucleobasesToAminoAcidsBySequence | Source code |
| correspondsToProperAASequence | Source code |
| determineComparisonMethod | Source code |
| doNNSubsamplingBatchStep | Source code |
| filterAminoAcidSequences | Source code |
| filterStringsForAAFunctions | Source code |
| getApproximateDistribution | Source code |
| getApproximateNearestNeighborDistribution | Source code |
| getAutomaticAverageDivergence | Source code |
| getAverageDivergence | Source code |
| getColumnSequences | Source code |
| getColumnValues | Source code |
| getContinuousJSDivergence | Source code |
| getContinuousJSDivergenceByIntegration | Source code |
| getDistanceMatrix | Source code |
| getDistanceVector | Source code |
| getGridDims | Source code |
| getIgBlastAnnotations | Source code |
| getIgorAnnotations | Source code |
| getJSDivergence | Source code |
| getMutationInfo | Source code |
| getPairwiseDistanceDistribution | Source code |
| getSequenceListFromFasta | Source code |
| getSumOfAbsoluteDifferences | Source code |
| hasStopCodon | Source code |
| hasUnrecognizedAminoAcids | Source code |
| loadNewDatasets | Source code |
| maskEmptyStringWithNA | Source code |
| multiplot | Source code |
| parsePythonDictionary | Source code |
| plotDistribution | Source code |
| processIgorAnnotations | Source code |
| removeEmptyStrings | Source code |
| removeSequencesWithDifferentGermlineAndSequenceLengths | Source code |
| resampleData | Source code |
| runIgor | Source code |
| standardizeList | Source code |
| subsample | Source code |
| subsampleToUniqueClones | Source code |
| subsampleVector | Source code |
