Files in matsengrp/sumrep

Summary statistics for B cell receptor (BCR) repertoires

.Rbuildignore

.gitignore

DESCRIPTION

Dockerfile

Examples/BCRAnalyses/BCRSummaryPlots.R Examples/BCRAnalyses/CompareBCRDatasets.R Examples/BCRAnalyses/PartisWorkflow.R Examples/BCRAnalyses/RunIgBlastAnnotations.R Examples/BCRAnalyses/RunPartisAnnotations.R Examples/BCRAnalyses/RunPartisIgBlastAnnotations.R Examples/BasicUsage.R Examples/Distributions.R Examples/ExampleComparisonUsingPartis.R Examples/ExampleComparisonWithoutPartis.R Examples/Lasso.R Examples/MDS.R Examples/MasterPlot.R Examples/PlotDistribution.R Examples/RunAnnotations.R Examples/ScoreStatistics.R Examples/TCRAnalyses/CompareTCRDatasets.R Examples/TCRAnalyses/RunIGoRAnnotations.R Examples/TCRAnalyses/TCRSummaryPlots.R

NAMESPACE

R/Approximation.R R/Compare.R R/DivergenceFunctions.R R/HDMD_FactorTransform.R R/HelperFunctions.R R/IGoRFunctions.R R/IgBlastFunctions.R R/PartisFunctions.R R/SumRep.R R/SummaryStats.R README.md data-raw/BuildExampleData.R

data-raw/test_dat.rds

data-raw/test_dat_boot.rds

data-raw/test_simu.rds

data/test_dat.rda

data/test_dat_boot.rda

data/test_simu.rda

docs/docker.md docs/extended_documentation.md docs/faq.md docs/installation.md

docs/sumrep-logo.png

docs/usage.md

inst/exec/process_output.py

inst/exec/run_igor.py

inst/exec/run_igor.sh

inst/exec/write_igb_germline_database.py

inst/extdata/test_annotations.csv

inst/extdata/test_boot.fa

inst/extdata/test_data.fa

partis_env.yml

requirements.txt

sumrep.Rproj

tests/testthat/helper-functions.R tests/testthat/helper-variables.R tests/testthat/test-main.R tests/testthat/test-partis.R tests/testthat/testthat.R

matsengrp/sumrep documentation built on Oct. 12, 2022, 4:09 p.m.