getHierarchyByTerm: getHierarchyByTerm
In mattheusmarzola/GOpruning: GOpruning
Description
Usage
Arguments
Value
Examples
Description
this function returns de hierarchy go based on params
Usage
1
getHierarchyByTerm(rootTerm = NA, ontology = NA, interactionType = "is_a")
Arguments
rootTerm
the term on de root hierachy, this term is used to pruning GO hierarchy and all hierarchy above it is returned
ontology
the ontology of GO. select one of this tree options: BP, MF or CC (Biological Process, Molecular Function or Cellular Component)
interactionType
the relations between terms, default is 'is_a'
Value
a list of the hierarchy pruned
Examples
1
getHierarchyByTerm(rootTerm = 'GO:0008501', ontology = 'BP')
mattheusmarzola/GOpruning documentation built on May 29, 2019, 5:40 a.m.
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Description Usage Arguments Value Examples
Description
this function returns de hierarchy go based on params
Usage
1 | getHierarchyByTerm(rootTerm = NA, ontology = NA, interactionType = "is_a")
|
Arguments
rootTerm |
the term on de root hierachy, this term is used to pruning GO hierarchy and all hierarchy above it is returned |
ontology |
the ontology of GO. select one of this tree options: BP, MF or CC (Biological Process, Molecular Function or Cellular Component) |
interactionType |
the relations between terms, default is 'is_a' |
Value
a list of the hierarchy pruned
Examples
1 | getHierarchyByTerm(rootTerm = 'GO:0008501', ontology = 'BP')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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