rt_estimation_ci: Estimate r(t) with confidence intervals

In matthewcso/rtFilterEstim: r(t) estimation

Description

Estimate r(t) with confidence intervals

Usage

rt_estimation_ci(
  incidence,
  ci_lower,
  ci_higher,
  n_resample = 200,
  level = 0.95,
  shift_amt = 0,
  n = 7,
  hide_invalid = TRUE
)

Arguments

incidence	incidence timeseries, vector
ci_lower	lower confidence interval estimated from linear_filter, vector
ci_higher	upper confidence interval estimated from linear_filter, vector
n_resample	number of bootstrapping attempts for confidence interval estimation
level	confidence interval level
shift_amt	number of timesteps to shift estimation back by (integer)
n	number of timesteps to filter (longer is smoother), must be odd
hide_invalid	whether or not to return NA for the first/last n-1 times

Value

dataframe with estimated r(t)

matthewcso/rtFilterEstim documentation built on Dec. 21, 2021, 2:55 p.m.