cmrMultiplexPlot: cmrMultiplexPlot

In matthewsilk/CMRnet: Construct and Analyse Social and Movement Networks from Spatio-temporally Referenced Capture-Mark Recapture Data

cmrMultiplexPlot

Description

igraph plotting for CMRnet object

Usage

cmrMultiplexPlot(
  nets,
  fixed_locs = c(TRUE, FALSE),
  locs = NULL,
  dynamic = c(TRUE, FALSE),
  rows = 3,
  layer_colours
)

Arguments

nets	A list of multiplex igraph networks output by cmr_igraph
fixed_locs	(TRUE/FALSE). Whether to keep the the locations of the nodes fixed between network windows or allow them to change
locs	A matrix or dataframe giving x and y coordinates of all nodes in the full network. Can be used to provide user-defined layouts to the graph - helpful for plotting locations in geographic space
dynamic	(TRUE/FALSE). If true this function will plot networks for the different network windows sequentially in the same plot window with a delay. If false then this function will plot the networks in a single, multipanel figure
rows	Sets the number of rows in the multipanel figure if dynamic=FALSE
layer_colours	Set the colour of the plane and nodes for each layer of the multiplex network. Needs to be a vector the same length as the number of layers in the network

Details

This function plots multiplex movement networks produced by CMRnet. It is developmental and it has fairly basic functionality currently. Networks can be plotted sequentially (dynamic=TRUE) or in a single multi-panelled figure (dynamic=FALSE)

Value

A series of network plots showing the multiplex movement network from each network window

Examples

## Not run: 

# load in data
data(cmrData2)

# set parameters
mindate<-"2010-01-01"
maxdate<-"2015-01-01"
intwindow<-60
netwindow<-12
overlap<-0

multimovenetdat <-
 MultiMoveNetCreate(
   data = cmrData2,
   intwindow = intwindow,
   mindate = mindate,
   maxdate = maxdate,
   netwindow = netwindow,
   overlap = overlap,
   nextonly = TRUE
 )

# convert to networks
networks<-cmr_igraph(movenetdat,type="movement")
cmrMultiplexPlot(nets=networks,
                fixed_locs=TRUE,
                dynamic=FALSE,
                rows=2,
                layer_colours=c("firebrick","dodgerblue"))

## End(Not run)

matthewsilk/CMRnet documentation built on Nov. 16, 2022, 10:47 p.m.