Man pages for matthewwolak/nadiv
(Non)Additive Genetic Relatedness Matrices

aicAkaike Information Criterion
aiCIConfidence Intervals for Variance Components
aiFunSampling (co)variances
constrainFunFunction used in conjunction with others to produce a profile...
drfxSimulated design random effects
F2009Pedigree, adapted from Fikse (2009)
FG90Pedigree, adapted from Table 1 in Fernando & Grossman (1990)
findDFCFinds the double first cousins in a pedigree
founderLineIdentifies the matriline or patriline to which each...
genAssignGeneration assignment
ggcontribGenetic group contribution
ggTutorialSimulated dataset used to analyze data with genetic group...
grfxSimulated genetic random effects
LRTestlog-Likelihood Ratio Test
makeACreates the additive genetic relationship matrix
makeAACreates the additive by additive epistatic genetic...
makeAinvCreates the inverse additive genetic relationship matrix
makeAstarMultCreates the inverse additive genetic relationship matrix with...
makeDCreate the dominance genetic relationship matrix
makeDomEpiCreates the additive by dominance and dominance by dominance...
makeDsimCreate the dominance genetic relationship matrix through an...
makeSCreates the additive genetic relationship matrix for the...
Mrode2Pedigree from Table 2.1 of Mrode (2005)
Mrode3Pedigree, from chapter 3 of Mrode (2005)
Mrode9Pedigree, adapted from example 9.1 of Mrode (2005)
nadiv-package(Non)Additive Genetic Relatedness Matrices in Animal Model...
numPedInteger Format Pedigree
parConstrainFunFunction used in the 'proLik' function to produce a profile...
pccREML convergence checks
pinApproximate standard errors for linear functions of variance...
prepPedPrepares a pedigree by sorting and adding 'founders'
proLikProfile Likelihoods
prunePedPrunes a pedigree based on individuals with phenotypes
Q1988Pedigree, adapted from Quaas (1988) equation [5]
simGGGenetic group pedigree and data simulation
simPedDFCDouble first cousin pedigree construction
simPedHSHalf-sib pedigree construction
sm2listConverts a sparse matrix into a three column format.
varTransTransforms ASReml-R gamma sampling variances to component...
warcolakPedigree and phenotypic values for a mythical population of...
matthewwolak/nadiv documentation built on Dec. 13, 2018, 12:50 a.m.