(Non)Additive Genetic Relatedness Matrices

aic | Akaike Information Criterion |

aiCI | Confidence Intervals for Variance Components |

aiFun | Sampling (co)variances |

constrainFun | Function used in conjunction with others to produce a profile... |

drfx | Simulated design random effects |

F2009 | Pedigree, adapted from Fikse (2009) |

FG90 | Pedigree, adapted from Table 1 in Fernando & Grossman (1990) |

findDFC | Finds the double first cousins in a pedigree |

founderLine | Identifies the matriline or patriline to which each... |

genAssign | Generation assignment |

ggcontrib | Genetic group contribution |

ggTutorial | Simulated dataset used to analyze data with genetic group... |

grfx | Simulated genetic random effects |

LRTest | log-Likelihood Ratio Test |

makeA | Creates the additive genetic relationship matrix |

makeAA | Creates the additive by additive epistatic genetic... |

makeAinv | Creates the inverse additive genetic relationship matrix |

makeAstarMult | Creates the inverse additive genetic relationship matrix with... |

makeD | Create the dominance genetic relationship matrix |

makeDomEpi | Creates the additive by dominance and dominance by dominance... |

makeDsim | Create the dominance genetic relationship matrix through an... |

makeS | Creates the additive genetic relationship matrix for the... |

Mrode2 | Pedigree from Table 2.1 of Mrode (2005) |

Mrode3 | Pedigree, from chapter 3 of Mrode (2005) |

Mrode9 | Pedigree, adapted from example 9.1 of Mrode (2005) |

nadiv-package | (Non)Additive Genetic Relatedness Matrices in Animal Model... |

numPed | Integer Format Pedigree |

parConstrainFun | Function used in the 'proLik' function to produce a profile... |

pcc | REML convergence checks |

pin | Approximate standard errors for linear functions of variance... |

prepPed | Prepares a pedigree by sorting and adding 'founders' |

proLik | Profile Likelihoods |

prunePed | Prunes a pedigree based on individuals with phenotypes |

Q1988 | Pedigree, adapted from Quaas (1988) equation [5] |

simGG | Genetic group pedigree and data simulation |

simPedDFC | Double first cousin pedigree construction |

simPedHS | Half-sib pedigree construction |

sm2list | Converts a sparse matrix into a three column format. |

varTrans | Transforms ASReml-R gamma sampling variances to component... |

warcolak | Pedigree and phenotypic values for a mythical population of... |

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