Files in matthieu-haudiquet/rothSGA
Rothstein Lab SGA Analysis Tools
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.Rapp.history
R/add-biological-replicates.R
R/add-genetic-distance.R
R/check-dead-strains.R
R/check-query-sensitivity-to-drug.R
R/check-self-crosses.R
R/exclude-large-colonies.R
R/leave-one-out-mean.R
R/leave-one-out-median.R
R/new-batch.R
R/normalize-batch-effect.R
R/normalize-plate-effect.R
R/normalize-spatial-effect.R
R/plot-sm-data.R
R/rothSGA-package.R
R/summarize-normalized-data.R
README.Rmd
README.md
inst/templates/batch-processing.Rmd
inst/templates/quality-control.Rmd
man/add_biological_replicates.Rd
man/add_genetic_distance.Rd
man/check_dead_strains.Rd
man/check_query_sensitivity_to_drug.Rd
man/check_self_crosses.Rd
man/exclude_large_colonies.Rd
man/leave_one_out_mean.Rd
man/leave_one_out_median.Rd
man/new_batch.Rd
man/normalize_batch_effect.Rd
man/normalize_plate_effect.Rd
man/normalize_spatial_effect.Rd
man/plot_sm_data.Rd
man/rothSGA.Rd
man/summarize_normalized_data.Rd
rothSGA.Rproj
tests/testthat.R
tests/testthat/screenmill-data/biological-replicate-annotation.csv
tests/testthat/screenmill-data/screenmill-annotations.csv
tests/testthat/screenmill-data/screenmill-calibration-crop.csv
tests/testthat/screenmill-data/screenmill-calibration-grid.csv
tests/testthat/screenmill-data/screenmill-collection-keys.csv
tests/testthat/screenmill-data/screenmill-collections.csv
tests/testthat/screenmill-data/screenmill-measurements.csv
tests/testthat/screenmill-data/screenmill-media.csv
tests/testthat/screenmill-data/screenmill-queries.csv
tests/testthat/screenmill-data/screenmill-treatments.csv
tests/testthat/test-1.R
