Man pages for matthieu-haudiquet/rothSGA
Rothstein Lab SGA Analysis Tools

add_biological_replicatesAdd biological replicate annotations
add_genetic_distanceCreates a distance column containing the genetic distance...
check_dead_strainsCreates 'WARNING_mixed_array.csv' as an easy to read...
check_query_sensitivity_to_drugCheck if the overall growth on the plates is too low,...
check_self_crossesCheck for growth of the self-cross. Query strains and array...
exclude_large_coloniesExclude large colonies
leave_one_out_meanGeneric function that drops abberant values of small...
leave_one_out_medianGeneric function that drops abberant values of small...
new_batchCreate a new batch report
normalize_batch_effectBatch effect normalization. Relies on the plate controls of...
normalize_plate_effectApply plate normalization
normalize_spatial_effectApply spatial effect normalization for all plates
plot_sm_dataCreates different figures with ggplot2 to visualize the data...
rothSGASGA analysis tools for the Rothstein Lab.
summarize_normalized_dataAggregates and summarizes technical replicates on the plate
matthieu-haudiquet/rothSGA documentation built on Aug. 21, 2017, 12:40 p.m.