Man pages for matthieu-haudiquet/rothSGA
Rothstein Lab SGA Analysis Tools
| add_biological_replicates | Add biological replicate annotations |
| add_genetic_distance | Creates a distance column containing the genetic distance... |
| check_dead_strains | Creates 'WARNING_mixed_array.csv' as an easy to read... |
| check_query_sensitivity_to_drug | Check if the overall growth on the plates is too low,... |
| check_self_crosses | Check for growth of the self-cross. Query strains and array... |
| exclude_large_colonies | Exclude large colonies |
| leave_one_out_mean | Generic function that drops abberant values of small... |
| leave_one_out_median | Generic function that drops abberant values of small... |
| new_batch | Create a new batch report |
| normalize_batch_effect | Batch effect normalization. Relies on the plate controls of... |
| normalize_plate_effect | Apply plate normalization |
| normalize_spatial_effect | Apply spatial effect normalization for all plates |
| plot_sm_data | Creates different figures with ggplot2 to visualize the data... |
| rothSGA | SGA analysis tools for the Rothstein Lab. |
| summarize_normalized_data | Aggregates and summarizes technical replicates on the plate |
