add_biological_replicates | Add biological replicate annotations |
add_genetic_distance | Creates a distance column containing the genetic distance... |
check_dead_strains | Creates 'WARNING_mixed_array.csv' as an easy to read... |
check_query_sensitivity_to_drug | Check if the overall growth on the plates is too low,... |
check_self_crosses | Check for growth of the self-cross. Query strains and array... |
exclude_large_colonies | Exclude large colonies |
leave_one_out_mean | Generic function that drops abberant values of small... |
leave_one_out_median | Generic function that drops abberant values of small... |
new_batch | Create a new batch report |
normalize_batch_effect | Batch effect normalization. Relies on the plate controls of... |
normalize_plate_effect | Apply plate normalization |
normalize_spatial_effect | Apply spatial effect normalization for all plates |
plot_sm_data | Creates different figures with ggplot2 to visualize the data... |
rothSGA | SGA analysis tools for the Rothstein Lab. |
summarize_normalized_data | Aggregates and summarizes technical replicates on the plate |
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