StressorResponseWorkbook: Get Stressor Response Data from Excel Workbook

In mattjbayly/JoeModelCE: Joe Model for Cumulative Effects

Get Stressor Response Data from Excel Workbook

Description

Extract the stressor response data from each sheet in the Excel workbook.

Usage

StressorResponseWorkbook(filename = NA)

Arguments

filename

A string. Relative file name to the stressor response Excel workbook.

Details

For more information about data format requirements, see the Data Upload and Results Export tab of the associated Shiny App.

Uses readxl::read_excel() to load in workbook sheets:

• Main sheet: meta data / cover sheet indicating:

  • stressor names

  • categories

  • interactions and linkages

  • scales

  • approximation function type

  • target life stages

  • contribution to survival or capacity parameters

  • stressor units

  • target model (CE or population models, or both)

• all additional stressor-response sheets in workbook

  • context specific stressor-response curve data

  • sheet name must match stressor names in Main sheet, otherwise "Bad worksheet names" error message.

  • sheets must contain columns for ⁠<stressor_name>⁠, ⁠Mean System Capacity (%)⁠, SD, low.limit, and up.limit

Value

A list object of the main_sheet, stressor_names and stressor response data frames (sr_dat).

mattjbayly/JoeModelCE documentation built on Nov. 14, 2023, 5:34 p.m.