NEWS.md

In mattmar/dynamAedes: A Unified Mechanistic Model for the Population Dynamics of Invasive Aedes Mosquitoes

dynamAedes 2.2.9

• Substitutes legend.pos with legend.position in vignettes.

dynamAedes 2.2.8

• Adds reference file for life history traits AedeslifeHistoryList.
• Adds function spreader.
• Adds vignettes 4 (Uncompressed output) and 5 (spreader).
• Fixes minor issues in adci.
• Fixes summary print for punctual and local scale.

dynamAedes 2.2.7

• Adapts all auxiliary functions to the dynamAedesClass output.
• Adds adci function that allows for substages statistics and merges space/non-space outputs.
• Adds summary and max methods for class dynamAedesClass.
• Removes dplyr from vignettes and packages.

dynamAedes 2.2.6

• Introduces output object as a dynamAedesClass
• Allows for species abbreviation at least 2 characters long (e.g., "ae")

dynamAedes 2.2.5

• Removes definitely rgdal from package
• Clears NAMESPACE

dynamAedes 2.2.0

• Substitutes fields::rdist with terra::distance which solves a bug in active dispersal
• Adds a switch for active dispersal only pDispersal=FALSE
• Removes warnings changing Beta function with polynomial for egg survival in Aedes aegypti
• Raised 0 hatching rate to 15°C for aegypti
• Other minor cosmetic changes
• Modify verbose option for debugging, now an integer with values 0 (silent), 1 or 2.

dynamAedes 2.1.2

• Transitioning from 'rgdal' and 'sp' to 'terra'
• Transitioning from 'insol' to 'geosphere'
• Removing block-loading of 'tidyverse' (speeding up loading?)
• Helper functions not exported any more

dynamAedes 2.1.1

• Adding rgdal in the description

dynamAedes 2.1.0

• Adding website with examples for the three scales (pkgdown)
• Coordinates now internally transformed (if not in lat/long) for the derivation of the photoperiod
• Adding option coords.proj4 to specify coordinate projection (in proj4 format)
• Renaming dynamAedes as dynamAedes.m

dynamAedes 2.0.3

• At regional scale now diapause derived pixel by pixel using the photoperiod of input coordinates.
• You can now introduce diapause eggs using dynamAedes argument "intro.degg"

dynamAedes 2.0.2

• Minor bug fix for idci and icci functions
• Change option name for passive dispersal; option to use a numeric vector for average passive dispersal
• Reshape vignette (simplified) for packaging
• Change vignette builder to knitr
• Add an initial test for reproducibility
• Add code example for dynamAedes

dynamAedes 2.0.1

• All functions reshaped for publication
• Physiological rates updates
• Vignette updated

dynamAedes 2.0.0

• Enhanced physiological rates for koreicus/japonicus
• Proportion of diapausing eggs dependent on photoperiod
• Diapausing eggs with fixed survival
• Diapausing eggs are laid only if photoperiod is decreasing and hatch only if photoperiod is rising.
• Increased minimum duration of egg and juvenile stages to match species biology

dynamAedes 1.0.1

• Functions to process the output are now integrated
• Adding dispersal kernel for albopictus
• README drafted
• Package now compiles with CRAN standards

dynamAedes 1.0.0

First release which includes functions to: * Simulate life cycle

mattmar/dynamAedes documentation built on March 17, 2024, 10:05 a.m.