Man pages for mauriziopaul/treatmentResponseDiallel
Package For the Analysis of Treatment-Response Phenotypes in the Influenza Diallel Project
| averageMips | averageMips: Average the MIP values |
| batched.plotter | batched.plotter: Make batched dot plots |
| batch.plotter.wrapper | batch.plotter.wrapper: Make dot plots by batch |
| batch.plotter.wrapper.new | batch.plotter.wrapper.new: Make dot plots by batch |
| col.switch | col.switch: Convert CC names to colors |
| csv.maker | csv.maker: Save analysis to csv |
| diallelMatrixMakeAndRotate | diallelMatrixMakeAndRotate |
| diallelMatrixMaker | diallelMatrixMaker |
| dot.plotter | dot.plotter: Make dot plots indicating treated and control... |
| FluDiData | Phenotypes from Influenza (Flu) Diallel |
| hpd.plotter | hpd.plotter: Make HPD plots |
| imputeMissing | imputeMissing: Impute missing phenotypes/covariates |
| inner.plotter | inner.plotter: Generate plots for each rep |
| lettersToNumbers | lettersToNumbers |
| make.matches | make.matches: make matches |
| makeRotationMatrix | makeRotationMatrix: Make a rotation matrix |
| mcmc.stack.and.burn | mcmc.stack.and.burn: Stack MCMC chains, after burning each |
| Mx1HaploClass | Mx1HaploClass: Convert CC founder strain letter to Mx... |
| plotBatchEffects | plotBatchEffects: Plot batch effects across timecourse |
| plotMips | plotMips: Plot the MIPs |
| plotMipsOverMIMPs | plotMipsOverMimps: Plot MIPs over reps. |
| plotVarps | plotVarps: Plot the variance projections |
| poe.analyzer | poe.analyzer: Generate plots of POE |
| removeDots | removeDots: remove dots, underscores from a string |
| run.tr.diallel | run.tr.diallel: run tRD analysis. |
| SARSDiData | Phenotypes from SARS Diallel |
| simplify.labels | simplify.labels: Convert labels |
| stackMatchReps | stackMatchReps: Combine results across replicates |
| sub.labels | sub.labels: Replace labels with just the strain information |
| treatmentResponseDiallel | treatmentResponseDiallel: A package for analysis of... |
| var.translate | var.translate: translate variable names |
| var.translate.glmm | var.translate.glmm: translate variable names from... |
