get_fit: Fit grdR on growth curves

In mauromiguelm/tdsR: Growth Response Delay (GRD) of cancer cell lines exposed to drugs

Fit grdR on growth curves

Description

Fit grdR on growth curves

Usage

get_fit(
  inputData,
  groupingVariables,
  timeTreatment = 0,
  upperLimit = 0.9,
  upperLimitThreshold = 0.8,
  smoothData = TRUE,
  orderConc = TRUE,
  saveModel = FALSE
)

Arguments

inputData	input data.frame in standard format
groupingVariables	variable to group (eg. controls, drugs, cells, etc..)
timeTreatment	time of intervention treatment
upperLimit	upperl in DRC: numeric upper limit parameters in the model
upperLimitThreshold	threshold to evaluate GRD effect after model fit
smoothData	should function to smooth data be applied?
orderConc	should concentration be ordered based on effect?
saveModel	should model parameters be returned?

Value

grdR fitted growth curves

Examples

get_fit(sample_data, groupingVariables = "perturbation",
 smoothData = FALSE, upperLimitThreshold = 1,
 timeTreatment = 1,upperLimit = 1,orderConc = TRUE,saveModel = FALSE)

mauromiguelm/tdsR documentation built on Oct. 24, 2022, 6:42 p.m.