load_datasets: Load dataset function

Description Usage Arguments Examples

View source: R/METACLUSTER_functions.R

Description

This function loads a datasets

Usage

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load_datasets(input_format = "PCF2017", filename.genes = "",
  filename.experiment_ids = "", filename.geneCluster = "",
  filename.foldChange_differentialExpression = "",
  filename.pvalue_differentialExpression = "",
  filename.experiment_condition_tissue_annotation = "")

Arguments

input_format

"custom" or "PCF2017" (default = "PCF2017")

filename.genes

genes (rows of the expression datasets)

filename.geneCluster

filename gene clusters

filename.foldChange_differentialExpression

differential expression data (fold changes)

filename.pvalue_differentialExpression

differential expression data (p-values)

filename.experiment_condition_tissue_annotation

experiment to treatment and tissue annotation

filename.experiment_series_ids

experimental datasets (columns of the expression datasets)

Examples

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mbanf/METACLUSTER documentation built on Feb. 27, 2020, 1:32 p.m.