load_datasets: Load dataset function

In mbanf/METACLUSTER: A package for context-specific expression analysis of metabolic gene clusters

Description

This function loads a datasets

Usage

load_datasets(input_format = "PCF2017", filename.genes = "",
  filename.experiment_ids = "", filename.geneCluster = "",
  filename.foldChange_differentialExpression = "",
  filename.pvalue_differentialExpression = "",
  filename.experiment_condition_tissue_annotation = "")

Arguments

input_format	"custom" or "PCF2017" (default = "PCF2017")
filename.genes	genes (rows of the expression datasets)
filename.geneCluster	filename gene clusters
filename.foldChange_differentialExpression	differential expression data (fold changes)
filename.pvalue_differentialExpression	differential expression data (p-values)
filename.experiment_condition_tissue_annotation	experiment to treatment and tissue annotation
filename.experiment_series_ids	experimental datasets (columns of the expression datasets)

Examples

load_datasets()

mbanf/METACLUSTER documentation built on Feb. 27, 2020, 1:32 p.m.