Files in mcanouil/NACHO
NanoString Quality Control Dashboard
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/FUNDING.yml
.github/ISSUE_TEMPLATE.md
.github/SUPPORT.md
.github/workflows/check-pak.yaml
.github/workflows/pkgdown-pak.yaml
.github/workflows/test-coverage-pak.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/GSE74821.R
R/NACHO-package.R
R/autoplot.R
R/check_outliers.R
R/deploy.R
R/factor_calculation.R
R/find_housekeeping.R
R/format_counts.R
R/format_tag_content.R
R/geometric_housekeeping.R
R/geometric_mean.R
R/geometric_probes.R
R/load_rcc.R
R/norm_geo.R
R/norm_glm.R
R/normalise.R
R/normalise_counts.R
R/print.R
R/probe_exclusion.R
R/qc_features.R
R/qc_imaging.R
R/qc_limit_detection.R
R/qc_pca.R
R/qc_positive_control.R
R/qc_rcc.R
R/read_rcc.R
R/read_tags.R
R/render.R
R/utils.R
R/visualise.R
README.Rmd
README.md
codecov.yml
data-raw/GSE74821.R
data/GSE74821.rda
inst/CITATION
inst/app/app.R
inst/app/utils.R
inst/app/www/about-bd.md
inst/app/www/about-fov.md
inst/app/www/about-hgf.md
inst/app/www/about-lod.md
inst/app/www/about-nacho.md
inst/app/www/about-pcl.md
inst/app/www/about-pf.md
inst/app/www/nacho_hex.png
inst/app/www/united-bootstrap.min.css
man/GSE74821.Rd
man/NACHO-package.Rd
man/autoplot.Rd
man/autoplot.nacho.Rd
man/check_outliers.Rd
man/deploy.Rd
man/figures/README-app.png
man/figures/README-nacho_app.gif
man/figures/README-visualise.png
man/figures/app_screenshot.R
man/figures/nacho_hex.png
man/load_rcc.Rd
man/normalise.Rd
man/print.nacho.Rd
man/render.Rd
man/visualise.Rd
pkgdown/_pkgdown.yml
tests/testthat.R
tests/testthat/plexset_data/plexset_01_01.RCC
tests/testthat/plexset_data/plexset_02_02.RCC
tests/testthat/plexset_data/plexset_03_03.RCC
tests/testthat/plexset_data/plexset_04_04.RCC
tests/testthat/plexset_data/plexset_05_05.RCC
tests/testthat/plexset_data/plexset_06_06.RCC
tests/testthat/plexset_data/plexset_07_07.RCC
tests/testthat/plexset_data/plexset_08_08.RCC
tests/testthat/plexset_data/plexset_09_09.RCC
tests/testthat/plexset_data/plexset_10_10.RCC
tests/testthat/plexset_data/plexset_11_11.RCC
tests/testthat/plexset_data/plexset_12_12.RCC
tests/testthat/salmon_data/salmon_01_01.RCC
tests/testthat/salmon_data/salmon_02_02.RCC
tests/testthat/salmon_data/salmon_03_03.RCC
tests/testthat/salmon_data/salmon_04_04.RCC
tests/testthat/salmon_data/salmon_05_05.RCC
tests/testthat/salmon_data/salmon_06_06.RCC
tests/testthat/salmon_data/salmon_07_07.RCC
tests/testthat/salmon_data/salmon_08_08.RCC
tests/testthat/salmon_data/salmon_09_09.RCC
tests/testthat/salmon_data/salmon_10_10.RCC
tests/testthat/salmon_data/salmon_11_11.RCC
tests/testthat/salmon_data/salmon_12_12.RCC
tests/testthat/test-autoplot.R
tests/testthat/test-check_outliers.R
tests/testthat/test-deploy.R
tests/testthat/test-load_rcc.R
tests/testthat/test-normalise.R
tests/testthat/test-print.R
tests/testthat/test-render.R
tests/testthat/test-visualise.R
vignettes/.gitignore
vignettes/NACHO-analysis.Rmd
vignettes/NACHO.Rmd
vignettes/README-app.png
vignettes/README-visualise.png
vignettes/nacho.bib
vignettes/nacho_hex.png
