In mcanouil/NACHO: NanoString Quality Control Dashboard

#| echo: false
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

if (file.exists("man/figures/nacho_app.mp4")) {
  system("ffmpeg -i man/figures/nacho_app.mp4 -vf fps=1 man/figures/nacho_app%04d.png")
  gif_app <- gifski::gifski(
    png_files = list.files(
      path = dirname(knitr::opts_chunk$get("fig.path")),
      pattern = "nacho_app.*.png",
      full.names = TRUE
    ),
    gif_file = paste0(knitr::opts_chunk$get("fig.path"), "nacho_app.gif"),
    width = 1920 * 2 / 3,
    height = 1080 * 2 / 3,
    delay = 0.50,
    loop = TRUE,
    progress = FALSE
  )
  unlink(list.files(
    path = dirname(knitr::opts_chunk$get("fig.path")),
    pattern = "nacho_app.*.png",
    full.names = TRUE
  ))
}

if (file.exists(paste0(knitr::opts_chunk$get("fig.path"), "nacho_app.gif"))) {
  gif_app <- paste0(knitr::opts_chunk$get("fig.path"), "nacho_app.gif")
} else {
  gif_app <- paste0(knitr::opts_chunk$get("fig.path"), "app.png")
}

NAnostring quality Control dasHbOard


Installation

#| eval: false
# Install NACHO from CRAN:
install.packages("NACHO")

# Or the development version from GitHub:
# install.packages("remotes")
remotes::install_github("mcanouil/NACHO")

Overview

#| echo: false
#| results: asis
cat(readLines(file.path("inst", "app", "www", "about-nacho.md"))[-c(1, 2)], sep = "\n")

Shiny Application (demo)

#| eval: false
shiny::runApp(system.file("app", package = "NACHO"))

#| echo: false
knitr::include_graphics(sub(".*/man", "man", gif_app))

#| eval: false
visualise(GSE74821)

Citing NACHO

#| echo: false
#| results: asis
print(citation("NACHO"), "html")

#| echo: false
#| comment: ""
print(citation("NACHO"), "bibtex")

---

Getting help

If you encounter a clear bug, please file a minimal reproducible example on github.
For questions and other discussion, please contact the package maintainer.

Code of Conduct

Please note that this project is released with a Contributor Code of Conduct.
By contributing to this project, you agree to abide by its terms.

mcanouil/NACHO documentation built on Feb. 1, 2024, 12:35 p.m.