Full Changelog: https://github.com/umr1283/umr1283/compare/v1.10.3...v1.10.4
Full Changelog: https://github.com/umr1283/umr1283/compare/v1.10.2...v1.10.3
Full Changelog: https://github.com/umr1283/umr1283/compare/v1.10.1...v1.10.2
on.exit
behaviour for 00-targets.R
to make changes even on errors.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.10.0...v1.10.1
Full Changelog: https://github.com/umr1283/umr1283/compare/v1.9.2...v1.10.0
gittargets
earlier.tarchetypes
.tarchetypes
and future.callr
.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.9.1...v1.9.2
R/use_gitignore.R
and R/use_targets.R
,_targets
and renv
directories.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.9.0...v1.9.1
R/create_project.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.8.3...v1.9.0
inst/fex/fexsend
,R/fex.R
.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.8.2...v1.8.3
R/use_gitignore.R
.*.Rproj
is now excluded from versionning.R/use_targets.R
,targets
script no longer rely on *.Rproj
.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.8.1...v1.8.2
R/use_rprofile.R
,~/.Rprofile
if it exists and in interactive mode.DESCRIPTION
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.8.0...v1.8.1
R/use_python.R
.R/create_project.R
.R/use_dir_structure.R
.R/migrate_project.R
.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.7.0...v1.8.0
R/create_project.R
,working_directory
is NULL
or ""
) or symbolic link (058ade53e66482426a8ded231fe2e3553a6dc4a2).xaringan
template when creating a project (37a417c20c391a1c66b4648fe55b5c7ea4d2bf7f).R/use_rprofile.R
,targets
lines in .Rprofile
(2f8c90b78749a02861fdaf7285364899abc10ec4).R/use_rprofile.R
,.gitignore
entry for targets
(c2cc1d51ee7b564fe27223a1e838637b8c096869).R/use_python.R
,R/use_targets.R
,R/use_dir_structure.R
,R/migrate_project.R
,migrate_project
(416e79a0d7499433efde68a13809cb8923e5bbe4).working_directory
(fc34b29d999ad1e631e5c37e4649b2ac4ff682fb).Full Changelog: https://github.com/umr1283/umr1283/compare/v1.6.0...v1.7.0
R/fex.R
,pkgdown
website.R/create_project.R
,renv
"library" directory.Use a dedicated directory for slides
.
text
/disks/PROJECT/project
├── data
├── docs
├── scripts
│ └── _dependencies.R
├── reports
├── slides
├── outputs (symlink to /disks/DATATMP/project/outputs)
├── logs
├── renv
├── README.md
├── renv.lock
└── project.Rproj
In R/use_targets.R
,
gittargets
.R/use_python.R
,R/use_xaringan.R
,slides
in the current working directory.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.5.1...v1.6.0
R/create_project.R
,R/migrate_project.R
,R/use_dir_structure.R
,R/use_git.R
,R/use_python.R
,R/targets.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.5.0...v1.5.1
R/create_project.R
,R/use_gitignore.R
,R/use_rprofile.R
,gert
by default (if installed).Full Changelog: https://github.com/umr1283/umr1283/compare/v1.4.0...v1.5.0
R/*
,lintr
warnings.R/use_dir_structure.R
,BiocManager
or here
by default.here
and tarchetypes
by default when targets
is required.R/use_dependencies.R
,# library("BiocManager")
.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.3.1...v1.4.0
inst/fex/fexsend
,fexsend
(http://fex.belwue.de/download/fexsend).DESCRIPTION
,SystemRequirements
for fexsend.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.3.0...v1.3.1
DESCRIPTION
,R/use_gitignore.R
,R/use_git.R
,.git
directory exists.R/use_dir_structure.R
,.Rprofile
contains source("renv/activate.R")
.R/create_project.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.2.3...v1.3.0
DESCRIPTION
,R/use_xaringan.R
,README.Rmd
.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.2.2...v1.2.3
DESCRIPTION
,LazyData
field.R/use_targets.R
,_targets.R
template script..Rprofile
(if it exists) with shortcut for targets.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.2.1...v1.2.2
R/fex.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.2.0...v1.2.1
R/use_xaringan.R
,xaringan
(https://github.com/umr1283/xaringan-template) template to scripts/slides
.R/migrate_project.R
,R/use_targets.R
,R/use_python.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.1.4...v1.2.0
R/use_targets.R
,R/use_rprofile.R
,targets
package in .Rprofile
,
if in interactive session and installed
(locally or system-wide depending on the project setup).Full Changelog: https://github.com/umr1283/umr1283/compare/v1.1.3...v1.1.4
R/use_affiliation.R
,R/use_readme.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.1.2...v1.1.3
R/use_targets.R
,inst/fex/fexsend
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.1.1...v1.1.2
DESCRIPTION
,markdown
format for roxygen2
documentation.R/create_project.R
,R/migrate_project.R
,R/use_affiliation.R
,R/use_targets.R
,R/use_python.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v1.1.0...v1.1.1
DESCRIPTION
,prompt
in Suggests
.R/use_rprofile.R
,prompt
package in .Rprofile
,
if in interactive session and installed
(locally or system-wide depending on the project setup).gert
package in .Rprofile
,
if in interactive session and installed
(locally or system-wide depending on the project setup).R/use_dir_structure.R
,targets
, if in interactive session and installed
(locally or system-wide depending on the project setup).R/fex.R
,pkgdown
.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.0.1...v1.1.0
R/use_python.R
,ensurepip
.Full Changelog: https://github.com/umr1283/umr1283/compare/v1.0.0...v1.0.1
DESCRIPTION
,rmarkdown
templates dependencies.targets
in Suggests
.withr
and callr
in Imports
to handle project architecture.R/create_project.R
(previously R/new_project.R
),BiocManager
to use MRAN with new option as of v1.30.12
.here
using renv
by default.0002
.renv::use_python()
.targets
.R/migrate_project.R
,BiocManager
to use MRAN with new option as of v1.30.12
.here
using renv
by default.0002
.renv::use_python()
.R/use_targets.R
,targets
.R/use_python.R
,reticulate
and Python
within renv
.R/use_affiliation.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v0.8.1...v1.0.0
R/new_project.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v0.8.0...v0.8.1
DESCRIPTION
,renv
in Suggests
.R/new_project.R
,renv
directory structure.0775
.BiocManager
install.R/migrate_project.R
,renv
project-like.BiocManager
install.Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.9...v0.8.0
DESCRIPTION
,R/ioslides_presentation.R
,rmarkdown
.Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.8...v0.7.9
ioslides_presentation.R
,Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.7...v0.7.8
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.6...v0.7.7
R/new_project.R
,.gitignore
.Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.5...v0.7.6
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.4...v0.7.5
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.3...v0.7.4
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.2...v0.7.3
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.1...v0.7.2
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.7.0...v0.7.1
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.6.0...v0.7.0
Rename data
to outputs
.
text
/disks/PROJECT/test
├── outputs -> /disks/DATATMP/test
├── docs
├── logs
├── reports
├── scripts
├── README.md
├── .git
├── .gitignore
└── test.Rproj
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.5.0...v0.6.0
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.4.1...v0.5.0
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.4.0...v0.4.1
Add a logs
directory.
text
/disks/PROJECT/test
├── data -> /disks/DATATMP/test
├── docs
├── logs
├── reports
├── scripts
├── README.md
├── .git
├── .gitignore
└── test.Rproj
Fix some style in README.md
file.
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.3.0...v0.4.0
Full Changelog: https://github.com/umr1283/umr1283/compare/v0.2.0...v0.3.0
dgapaq
:UMR 1283 - QC Imputation (VCF)
.UMR 1283 - QC PLINK
.dmapaq
:UMR 1283 - QC idats
.Full Changelog: https://github.com/umr1283/umr1283/compare/v0.1.0...v0.2.0
NEWS.md
file to track changes to the package.Added a RStudio project template UMR 1283 - RStudio Project Templates
.
text
/disks/PROJECT/test
├── data -> /disks/DATATMP/test
├── docs
├── reports
├── scripts
├── README.md
├── .git
├── .gitignore
└── test.Rproj
Added Rmarkdown templates for:
UMR 1283 - ioslides
.UMR 1283 - PowerPoint
.UMR 1283 - Report
.UMR 1283 - QC idats
.UMR 1283 - QC PLINK
.UMR 1283 - QC Imputation (VCF)
.Add the following code to your website.
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