Man pages for mcavallaro/rancovr
Cluster detection in R with RAndom Neighbourhood COVeRing
| baseline_for_sim | Real baseline matrix corresponding to the simulated data in... |
| Clean | Clean |
| cmle | Estimate the parameters for the seasonal model given the... |
| cmle1 | Optimize function 'neg.log.like' conditioned on having the... |
| cmle2 | Optimize function 'neg.log.like' conditioned on having the... |
| compute | Compute exceedance probability in a cylinder. |
| compute.from.tab.baseline | Compute exceedance probability in a cylinder. |
| CreateBaselineMatrix | Create and save a baseline matrix |
| CreateCylinders | Create cylinders. |
| CreateCylinders.delay | n.cylinders=10000 takes around 3 hours for the whole dataset,... |
| CreateObservationMatrices | CreateObservationMatrices |
| EmmtypeFactor.delay_ | At a given week, a fraction lambda_untyped \approx 0.6 of all... |
| foo | rancovr: Cluster detection in R with RAndom Neighbourhood... |
| f_radii_and_heights_ | This funcion is analolgous to f_radii_and_heights2, but is... |
| f_radii_and_heights2 | Find cylinders' radii and heights |
| GB_region_boundaries | GB boundaries. |
| lambda | Lambda Seasonal model for the intensity function, lambda(t) =... |
| make_circle | centers: the data frame of centers with ID radius: radius... |
| neg.log.like | Negative log-likelihood |
| plotCircle | centers: the data frame of centers with ID radius: radius... |
| postcode.data | UK postcode location and population. |
| postcode.in.england | postcode.in.england |
| PostcodeMap | Map postcodes to coordinates Returns and save... |
| postcode.to.location2 | postcode.to.location2 |
| postcode.to.location3 | postcode.to.location3 |
| postcode.to.location.and.population | postcode.to.location.and.population |
| postcode.to.region | postcode.to.region |
| predict.cmle | Lambda Seasonal model for the intensity function, lambda(t) =... |
| rcylinder | Draw random cylinder coordinates |
| Simulate | Simulate an observation matrix |
| simulation_data | Simulation data. |
| tabulated.baseline | tabulated.baseline |
| tabulated.baseline2 | tabulated.baseline |
| TimeFactor | Find temporal component of the baseline |
| UpdateBaselineMatrix | Update baseline matrix |
| UpdateObservationMatrices | Upgrade observation matrix |
| UpdateTimeFactor | Update Time factor |
| UpgradeBaselineMatrix | Upgrade baseline matrix |
| warning.score | Compute the warning score of a case (location and date). |
| warning.score2 | Compute the warning score of a case (location and date). |
