export: Export the results

In mchevalier2/crestr: A Probabilistic Approach to Reconstruct Past Climates Using Palaeoecological Datasets

Export the results

Description

Export the results generated by the reconstruction

Usage

export(
  x,
  dataname = x$misc$site_info$site_name,
  climate = x$parameters$climate,
  loc = getwd(),
  as.csv = FALSE,
  fullUncertainties = FALSE,
  loo = FALSE,
  weights = FALSE,
  pdfs = FALSE
)

Arguments

x	The name, age or depth of the rows of df (the samples).
dataname	The name of the site (default: x$misc$site_info$site_name)
climate	The climate data to export. Data for all climate variables are saved by default.
loc	The path where to export the data (default: working directory)
as.csv	Boolean to indicate if the data should be exported as csv (TRUE) or xlsx (FALSE, default)
fullUncertainties	A boolean to export the full climate uncertainty distribution (default FALSE)
loo	A boolean to export the leave-one-out data if they exist (default FALSE)
weights	A boolean to export the weights derived from the percentages (default FALSE)
pdfs	A boolean to export the taxa's pdfs (default FALSE)

Value

No return value, function called to export the results.

Examples

## Not run: 
  data(crest_ex)
  data(crest_ex_pse)
  data(crest_ex_selection)
  reconstr <- crest(
    df = crest_ex, pse = crest_ex_pse, taxaType = 0,
    site_info = c(7.5, 7.5),
    climate = c("bio1", "bio12"), bin_width = c(2, 20),
    shape = c("normal", "lognormal"),
    selectedTaxa = crest_ex_selection, dbname = "crest_example",
    leave_one_out = TRUE
  )
  #> Replace 'tempdir()' by the location where the sample should be saved (e.g. 'getwd()')
  export(reconstr, dataname='crest_example',
         fullUncertainties=TRUE, weights=TRUE, loo=TRUE, pdfs=TRUE,
         loc=tempdir())

## End(Not run)

mchevalier2/crestr documentation built on Feb. 14, 2025, 6:31 p.m.