Files in mcieslik-mctp/gscars
.Rbuildignore
.gitmodules
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/api.R
R/baf-data.R
R/baf-llik.R
R/barcode.R
R/bun.R
R/cnv.R
R/external.R
R/filter.R
R/fq.R
R/gscars-package.r
R/lr-cand.R
R/lr-data.R
R/lr-grid.R
R/lr-llik.R
R/misc.R
R/opts.R
R/plot.R
R/seg.R
R/sex.R
R/tile.R
R/vardict.R
R/vcf.R
README.Rmd
README.md
inst/doc/TODO.md
inst/extdata/1000G-pilot-unmask-hg38.bed.gz
inst/extdata/1000G-strict-unmask-hg38.bed.gz
inst/extdata/agilent-v4-targets-125-hg38-ucsc.bed.gz
inst/extdata/agilent-v4-targets-hg38-ucsc.bed.gz
inst/extdata/barcode-whitelist-4mwafeb2016-10x.txt.gz
inst/extdata/hg38.blacklist.bed.gz
inst/extdata/hg38.cytoband.bed.gz
inst/extdata/hg38.cytobands.bed.gz
inst/extdata/nextera-v1.2-targets-hg19-ucsc.bed.gz
inst/extdata/nextera-v1.2-targets-hg38-ucsc.bed.gz
inst/extdata/onco1500-v3-targets-hg38-ucsc.bed.gz
inst/extdata/part1_1.fq.gz
inst/extdata/part1_2.fq.gz
inst/extdata/part2_1.fq.gz
inst/extdata/part2_2.fq.gz
inst/extdata/part3_1.fq.gz
inst/extdata/part3_2.fq.gz
inst/extdata/segdups-10x-hg38-ucsc.bedpe
inst/extdata/sv-blacklist-10x-hg38-ucsc.bed.gz
inst/extdata/test_1.fq.gz
inst/extdata/test_10x.bam
inst/extdata/test_2.fq.gz
inst/include/barcodes.h
inst/include/util.h
man/countBarcodes.Rd
man/extractMolecules.Rd
man/extractMolecules2.Rd
man/gscars.Rd
man/preprocessFastq.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/bam_funcs.cpp
src/barcodes.c
src/fq_funcs.cpp
src/util.c
